View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12107_low_3 (Length: 446)

Name: NF12107_low_3
Description: NF12107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12107_low_3
NF12107_low_3
[»] chr4 (10 HSPs)
chr4 (20-438)||(26315399-26315826)
chr4 (37-81)||(56497623-56497667)
chr4 (25-63)||(42756109-42756147)
chr4 (33-81)||(19731140-19731189)
chr4 (37-81)||(7230282-7230326)
chr4 (37-81)||(24785477-24785521)
chr4 (37-81)||(24822745-24822789)
chr4 (37-81)||(42845027-42845071)
chr4 (37-81)||(46676513-46676557)
chr4 (25-81)||(55924790-55924846)
[»] chr5 (8 HSPs)
chr5 (217-428)||(11755402-11755606)
chr5 (21-81)||(2053028-2053088)
chr5 (34-81)||(26400224-26400271)
chr5 (22-63)||(22901979-22902020)
chr5 (36-81)||(36321508-36321553)
chr5 (37-81)||(16133080-16133124)
chr5 (21-81)||(37932332-37932392)
chr5 (37-81)||(39914903-39914947)
[»] chr8 (16 HSPs)
chr8 (354-427)||(35219835-35219908)
chr8 (22-59)||(11104788-11104825)
chr8 (22-82)||(40167323-40167383)
chr8 (37-80)||(444416-444459)
chr8 (33-63)||(5179813-5179843)
chr8 (22-80)||(9635053-9635111)
chr8 (23-61)||(33620920-33620958)
chr8 (37-78)||(1244720-1244761)
chr8 (20-81)||(19778067-19778128)
chr8 (45-82)||(29774372-29774409)
chr8 (33-77)||(12714381-12714425)
chr8 (37-81)||(15438455-15438499)
chr8 (37-81)||(15529759-15529803)
chr8 (37-81)||(17704015-17704059)
chr8 (37-81)||(19488302-19488346)
chr8 (37-81)||(30623295-30623339)
[»] chr3 (11 HSPs)
chr3 (22-81)||(52119378-52119437)
chr3 (33-80)||(10926472-10926519)
chr3 (22-81)||(29631188-29631247)
chr3 (34-81)||(47377361-47377408)
chr3 (35-81)||(16980367-16980413)
chr3 (22-60)||(17507699-17507737)
chr3 (37-81)||(1149084-1149128)
chr3 (39-79)||(13992675-13992715)
chr3 (37-81)||(25505716-25505760)
chr3 (44-80)||(33224690-33224726)
chr3 (37-81)||(46469279-46469323)
[»] chr6 (7 HSPs)
chr6 (23-77)||(9923246-9923300)
chr6 (22-81)||(18254101-18254160)
chr6 (39-81)||(7083009-7083051)
chr6 (39-81)||(26522474-26522516)
chr6 (33-81)||(788868-788916)
chr6 (33-81)||(8629707-8629755)
chr6 (37-81)||(9333733-9333777)
[»] chr2 (15 HSPs)
chr2 (37-81)||(7413204-7413248)
chr2 (25-81)||(10156019-10156075)
chr2 (33-81)||(20120732-20120780)
chr2 (21-81)||(24593378-24593438)
chr2 (34-78)||(30045458-30045502)
chr2 (34-78)||(30050621-30050665)
chr2 (34-78)||(30141665-30141709)
chr2 (35-81)||(11560500-11560546)
chr2 (23-80)||(12124687-12124744)
chr2 (36-81)||(18231487-18231532)
chr2 (37-81)||(19179065-19179109)
chr2 (37-81)||(20455893-20455937)
chr2 (21-81)||(24548013-24548073)
chr2 (37-81)||(29544629-29544673)
chr2 (37-81)||(40099398-40099442)
[»] scaffold0025 (1 HSPs)
scaffold0025 (22-81)||(64220-64279)
[»] chr7 (6 HSPs)
chr7 (22-81)||(46987088-46987147)
chr7 (23-60)||(8879748-8879785)
chr7 (24-81)||(24991783-24991840)
chr7 (37-81)||(5352331-5352375)
chr7 (37-81)||(8615025-8615069)
chr7 (37-81)||(21050237-21050281)
[»] chr1 (8 HSPs)
chr1 (22-81)||(35473954-35474013)
chr1 (20-61)||(45190267-45190308)
chr1 (37-81)||(5907801-5907845)
chr1 (23-59)||(11913754-11913790)
chr1 (37-81)||(17283953-17283997)
chr1 (35-79)||(20372922-20372966)
chr1 (37-81)||(27127226-27127270)
chr1 (37-81)||(38448881-38448925)
[»] scaffold1379 (1 HSPs)
scaffold1379 (33-81)||(1638-1686)
[»] scaffold0069 (1 HSPs)
scaffold0069 (35-79)||(52084-52128)
[»] scaffold0044 (1 HSPs)
scaffold0044 (37-81)||(42349-42393)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 26315826 - 26315399
Alignment:
Q  20 tagggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctcgaggactgctacttg----------tgtaatgacttag 109  Q
    ||||||||||| | |||||||||||||||||||||||| |||||| ||||||| ||||||||||| |||||||||||          |||||||||||||    
T  26315826 tagggttcgaacatcgaaccttgtatatattatgcattatccttttaaattgaactaagctcgagaactgctacttgctacctcttgtgtaatgacttag 26315727  T
Q  110 gaacttaggtaagaaattattaactcattatatagtaaatttttgatgagatattttggttgagatactatgtaagatcacttttgtgttttggttgaac 209  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26315726 gaacttaggtaagaaattattaactcatcatatagtaaatttgtgatgagatattttggttgagatactatgtaagatcacttttgtgttt-ggttgaac 26315628  T
Q  210 tttttaacatcaaattaacttcaaagttataatcaaactcaaatcacttcaatttaaactaacttttgatctaatcaattcgataatatcaaggtcaact 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26315627 tttttaacatcaaattaacttcaaagttataatcaaactcaaatcacttcaatttaaactaacttttgatctaatcaattcgataatatcaaggtcatct 26315528  T
Q  310 agaatcacgataaccaattttccaatacaaagcgagttaatcaataatctaaacatgttgtgaaaaattcagtgataattttaaattttaattgcatgac 409  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26315527 agaatcatgataaccaattttccagtgcaaagcgagttaatcaataatctaaacatgttgtgaaaatttcagtgataattttaaattttaattgcatgac 26315428  T
Q  410 atggtgtggtttcatcatacataatcatt 438  Q
    |||||||||||||||||||||||||||||    
T  26315427 atggtgtggtttcatcatacataatcatt 26315399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 56497623 - 56497667
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | |||||||||||||||    
T  56497623 accttgcatatattatgcattgtccttaccaattgagctaagctc 56497667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 42756109 - 42756147
Alignment:
Q  25 ttcgaataccgaaccttgtatatattatgcattgtcctt 63  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  42756109 ttcgaatcccgaaccttgcatatattatgcattgtcctt 42756147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 19731140 - 19731189
Alignment:
Q  33 ccgaaccttgtatatatta-tgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||| |||||||| |||||||||||| | |||||||||||||||    
T  19731140 ccgaaccttgcatatattaatgcattgtccttaccaattgagctaagctc 19731189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 7230326 - 7230282
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  7230326 accttgcatatattatgcattgtccttaccaactgagctaagctc 7230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 24785477 - 24785521
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||||||||||||||||||| | || |||||| |||||    
T  24785477 accttgtatatattatgcattgtccttaccaactgagcttagctc 24785521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 24822789 - 24822745
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||||||||||||||||||| | || |||||| |||||    
T  24822789 accttgtatatattatgcattgtccttaccaactgagcttagctc 24822745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 42845071 - 42845027
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||||| || |||| |||||||    
T  42845071 accttgcatatattatgcattgtcctttccaactgagttaagctc 42845027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 46676513 - 46676557
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  46676513 accttgcatatattatgcattgtccttaccaactgagctaagctc 46676557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 55924790 - 55924846
Alignment:
Q  25 ttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||| | ||| |||| |||||||||| ||||||||| | |||||||||||||||    
T  55924790 ttcgaatcctgaaacttgcatatattatgtattgtccttaccaattgagctaagctc 55924846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 217 - 428
Target Start/End: Complemental strand, 11755606 - 11755402
Alignment:
Q  217 catcaaattaacttcaaagttataatcaaactcaaatcacttcaatttaaactaacttttgatctaatcaattcgataatatcaaggtcaactagaatca 316  Q
    |||||||||||||||||  |||  ||||||||||||||  |||| || |||||||||||||||||||||||||||||| |||||| || | | |||||||    
T  11755606 catcaaattaacttcaatattaatatcaaactcaaatcttttcacttcaaactaacttttgatctaatcaattcgatagtatcaaagttatcgagaatca 11755507  T
Q  317 cgataaccaattttccaatacaaagcgagttaatcaataatctaaacatgttgtgaaaaattcagtgataattttaaattttaattgcatgacatggtgt 416  Q
    ||||||| |||| |||  | || |  ||||        |||||||||||||| ||||||||||| |||||||| |||||| | |||||||||||||||||    
T  11755506 cgataacaaattgtccggtgcagaatgagt-------caatctaaacatgttatgaaaaattcaatgataattctaaattctgattgcatgacatggtgt 11755414  T
Q  417 ggtttcatcata 428  Q
    ||||| ||||||    
T  11755413 ggtttaatcata 11755402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 2053088 - 2053028
Alignment:
Q  21 agggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||  ||| ||||||||||| ||||||||||||||| | ||||||||| |||||    
T  2053088 agggttcgaactccggaccttgtatattttatgcattgtccttaccaattgagctgagctc 2053028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 26400224 - 26400271
Alignment:
Q  34 cgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||| ||||||||| |||||||||||||| | |||||||||||||||    
T  26400224 cgaactttgtatatactatgcattgtccttaccaattgagctaagctc 26400271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 22902020 - 22901979
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctt 63  Q
    |||||||||| |||||| ||| ||||||||||||||||||||    
T  22902020 gggttcgaatcccgaactttgcatatattatgcattgtcctt 22901979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 36321508 - 36321553
Alignment:
Q  36 aaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||| |||||||||||||||||||| | || ||||||||||||    
T  36321508 aaccttgcatatattatgcattgtccttaccaactgagctaagctc 36321553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 16133080 - 16133124
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  16133080 accttgcatatattatgcattgtccttaccaactgagctaagctc 16133124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 37932392 - 37932332
Alignment:
Q  21 agggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||  ||| |||||| |||||||||||||||||| | | || ||||||||||||    
T  37932392 agggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctc 37932332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 39914947 - 39914903
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | ||||||| |||||||    
T  39914947 accttgcatatattatgcattgtccttaccaattgagttaagctc 39914903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 427
Target Start/End: Complemental strand, 35219908 - 35219835
Alignment:
Q  354 taatctaaacatgttgtgaaaaattcagtgataattttaaattttaattgcatgacatggtgtggtttcatcat 427  Q
    ||||||||||||||| || |||||||| |||||||||||||||||  || ||||||||||||||||||||||||    
T  35219908 taatctaaacatgttttgtaaaattcaatgataattttaaattttgtttacatgacatggtgtggtttcatcat 35219835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 11104825 - 11104788
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgt 59  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11104825 gggttcgaatcccgaaccttgtatatattatgcattgt 11104788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 40167383 - 40167323
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctcg 82  Q
    ||||| |||| ||||||||||||||||||||||||||||| | | || |||| ||||||||    
T  40167383 gggtttgaatcccgaaccttgtatatattatgcattgtccataccaactgagttaagctcg 40167323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 444459 - 444416
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagct 80  Q
    |||||| |||||||||||||||||||| | ||||||||||||||    
T  444459 accttgcatatattatgcattgtccttaccaattgagctaagct 444416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 5179843 - 5179813
Alignment:
Q  33 ccgaaccttgtatatattatgcattgtcctt 63  Q
    |||||||||||||||||||||||||||||||    
T  5179843 ccgaaccttgtatatattatgcattgtcctt 5179813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 9635053 - 9635111
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagct 80  Q
    |||||||||  |||||||||| || ||||||||||| ||||| |||| |||||||||||    
T  9635053 gggttcgaaccccgaaccttgcatgtattatgcattatccttacaaactgagctaagct 9635111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 33620958 - 33620920
Alignment:
Q  23 ggttcgaataccgaaccttgtatatattatgcattgtcc 61  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  33620958 ggttcgaactccgaaccttgtatatattatgcattgtcc 33620920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 78
Target Start/End: Original strand, 1244720 - 1244761
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaag 78  Q
    ||||||||||||||||||||||||||| | || |||||||||    
T  1244720 accttgtatatattatgcattgtccttaccaactgagctaag 1244761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 19778128 - 19778067
Alignment:
Q  20 tagggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||| ||||||  ||| |||||| |||||||||||||||||||| | || ||||||||||||    
T  19778128 taggattcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctc 19778067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 29774409 - 29774372
Alignment:
Q  45 tatattatgcattgtcctttcaaattgagctaagctcg 82  Q
    |||||||||||||||||||||  |||||||||||||||    
T  29774409 tatattatgcattgtcctttcttattgagctaagctcg 29774372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 12714381 - 12714425
Alignment:
Q  33 ccgaaccttgtatatattatgcattgtcctttcaaattgagctaa 77  Q
    |||||||||| |||||||||||||||||| ||| || ||||||||    
T  12714381 ccgaaccttgcatatattatgcattgtcccttccaactgagctaa 12714425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 15438499 - 15438455
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  15438499 accttgcatatattatgcattgtccttaccaagtgagctaagctc 15438455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 15529803 - 15529759
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  15529803 accttgcatatattatgcattgtccttaccaagtgagctaagctc 15529759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 17704059 - 17704015
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  17704059 accttgcatatattatgcattgtccttaccaactgagctaagctc 17704015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 19488346 - 19488302
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||||||||||||||||||| | || ||||||| ||||    
T  19488346 accttgtatatattatgcattgtccttaccaactgagctatgctc 19488302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 30623339 - 30623295
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  30623339 accttgcatatattatgcattgtccttaccaactgagctaagctc 30623295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 52119437 - 52119378
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||  |||||||||| |||||||||||||||||||| | || ||||||||||||    
T  52119437 gggttcgaaccccgaaccttgcatatattatgcattgtccttaccaactgagctaagctc 52119378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 10926519 - 10926472
Alignment:
Q  33 ccgaaccttgtatatattatgcattgtcctttcaaattgagctaagct 80  Q
    |||||||||| |||||||||||||||||||| | || |||||||||||    
T  10926519 ccgaaccttgcatatattatgcattgtccttaccaactgagctaagct 10926472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 29631247 - 29631188
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||| |||| |||||||||| |||||||||||||||||| | | || ||||||||||||    
T  29631247 gggtttgaatcccgaaccttgcatatattatgcattgtccataccaactgagctaagctc 29631188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 47377361 - 47377408
Alignment:
Q  34 cgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||||||||||||||||||||||| | || |||| |||||||    
T  47377361 cgaaccttgtatatattatgcattgtccttaccaactgagttaagctc 47377408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 16980367 - 16980413
Alignment:
Q  35 gaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||| |||||||||||||||||||| | || ||||||||||||    
T  16980367 gaaccttgcatatattatgcattgtccttaccaactgagctaagctc 16980413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 17507699 - 17507737
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtc 60  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  17507699 gggttcgaatcccgaaccttgcatatattatgcattgtc 17507737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 1149084 - 1149128
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  1149084 accttgcatatattatgcattgtccttaccaactgagctaagctc 1149128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 13992715 - 13992675
Alignment:
Q  39 cttgtatatattatgcattgtcctttcaaattgagctaagc 79  Q
    ||||||||||||||||||||||||| | || ||||||||||    
T  13992715 cttgtatatattatgcattgtccttaccaactgagctaagc 13992675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 25505716 - 25505760
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| |||| |||| |||||||    
T  25505716 accttgcatatattatgcattgtccttacaaactgagttaagctc 25505760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 33224690 - 33224726
Alignment:
Q  44 atatattatgcattgtcctttcaaattgagctaagct 80  Q
    |||||||||||||||||||| | ||||||||||||||    
T  33224690 atatattatgcattgtccttaccaattgagctaagct 33224726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 46469323 - 46469279
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  46469323 accttgaatatattatgcattgtccttaccaactgagctaagctc 46469279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 9923300 - 9923246
Alignment:
Q  23 ggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaa 77  Q
    |||| |||| |||||||||||||||||||||||||||||||   |||||||||||    
T  9923300 ggtttgaatcccgaaccttgtatatattatgcattgtccttatcaattgagctaa 9923246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 18254101 - 18254160
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||| ||| |||||| || ||||||||||||||||| | || ||||||||||||    
T  18254101 gggttcgaatcccggaccttgcatgtattatgcattgtccttaccaactgagctaagctc 18254160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 7083009 - 7083051
Alignment:
Q  39 cttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||| |||||||||||||||||||| | |||||||||||||||    
T  7083009 cttgcatatattatgcattgtccttaccaattgagctaagctc 7083051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 26522516 - 26522474
Alignment:
Q  39 cttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||||||||||||||||| | || ||||||||||||    
T  26522516 cttgtatatattatgcattgtccttaccaactgagctaagctc 26522474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 788916 - 788868
Alignment:
Q  33 ccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||| |||||||||||||||||||| | || |||| |||||||    
T  788916 ccgaaccttgcatatattatgcattgtccttaccaactgagataagctc 788868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 8629707 - 8629755
Alignment:
Q  33 ccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||| |||||||||||||||||| | | ||||||| |||||||    
T  8629707 ccgaaccttgcatatattatgcattgtccataccaattgagttaagctc 8629755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 9333777 - 9333733
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||| ||||||||||||| | |||||||||||||||    
T  9333777 accttgcatatataatgcattgtccttaccaattgagctaagctc 9333733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 7413204 - 7413248
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||||||||||||||||||| | || ||||||||||||    
T  7413204 accttgtatatattatgcattgtccttaccaactgagctaagctc 7413248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 10156075 - 10156019
Alignment:
Q  25 ttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| ||||||||||| |||||||||| ||||||||| | || ||||||||||||    
T  10156075 ttcgaacaccgaaccttgcatatattatgtattgtccttaccaactgagctaagctc 10156019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 20120732 - 20120780
Alignment:
Q  33 ccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||| |||||||||||||||||||| | || ||||||||||||    
T  20120732 ccgaaccttgcatatattatgcattgtccttaccaactgagctaagctc 20120780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 24593438 - 24593378
Alignment:
Q  21 agggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||  ||| |||||| |||||||||||||||||||| | || ||||||||||||    
T  24593438 agggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctc 24593378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 30045502 - 30045458
Alignment:
Q  34 cgaaccttgtatatattatgcattgtcctttcaaattgagctaag 78  Q
    |||||||||||||||||||||||||||| | | ||||||||||||    
T  30045502 cgaaccttgtatatattatgcattgtccctaccaattgagctaag 30045458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 30050665 - 30050621
Alignment:
Q  34 cgaaccttgtatatattatgcattgtcctttcaaattgagctaag 78  Q
    |||||||||||||||||||||||||||| | | ||||||||||||    
T  30050665 cgaaccttgtatatattatgcattgtccctaccaattgagctaag 30050621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 30141709 - 30141665
Alignment:
Q  34 cgaaccttgtatatattatgcattgtcctttcaaattgagctaag 78  Q
    |||||||||||||||||||||||||||| | | ||||||||||||    
T  30141709 cgaaccttgtatatattatgcattgtccctaccaattgagctaag 30141665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 11560546 - 11560500
Alignment:
Q  35 gaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||| |||||||||||||||||| | | |||||||||||||||    
T  11560546 gaaccttgcatatattatgcattgtccctaccaattgagctaagctc 11560500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 12124744 - 12124687
Alignment:
Q  23 ggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagct 80  Q
    ||||||||  ||| |||||| |||||||||||||||||||| | || |||||||||||    
T  12124744 ggttcgaactccggaccttgcatatattatgcattgtccttaccaactgagctaagct 12124687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 18231487 - 18231532
Alignment:
Q  36 aaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||| |||||||||||||||||||| | || ||||||||||||    
T  18231487 aaccttgcatatattatgcattgtccttaccaactgagctaagctc 18231532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 19179065 - 19179109
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  19179065 accttgcatatattatgcattgtccttaccaactgagctaagctc 19179109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 20455937 - 20455893
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||| | | |||||||||||||||    
T  20455937 accttgcatatattatgcattgtccataccaattgagctaagctc 20455893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 24548073 - 24548013
Alignment:
Q  21 agggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||  ||| |||||| |||||||||| ||||||||| | || ||||||||||||    
T  24548073 agggttcgaaccccggaccttgaatatattatggattgtccttaccaactgagctaagctc 24548013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 29544673 - 29544629
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||| | | |||||||||||||||    
T  29544673 accttgcatatattatgcattgtccctaccaattgagctaagctc 29544629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 40099398 - 40099442
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  40099398 accttgcatatattatgcattgtccttaccaactgagctaagctc 40099442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 64279 - 64220
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||| ||| |||||| |||||||||||||||||| | | | |||||||||||||    
T  64279 gggttcgaatcccggaccttgcatatattatgcattgtccataccagttgagctaagctc 64220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 46987147 - 46987088
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||  ||| |||||| |||||||||||||||||||| | || ||||||||||||    
T  46987147 gggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctc 46987088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 8879748 - 8879785
Alignment:
Q  23 ggttcgaataccgaaccttgtatatattatgcattgtc 60  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  8879748 ggttcgaatcccgaaccttgcatatattatgcattgtc 8879785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 24991840 - 24991783
Alignment:
Q  24 gttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||| ||| | |||| |||||||||||||||||||| | || ||||||||||||    
T  24991840 gttcgaatcccgtatcttgcatatattatgcattgtccttaccaactgagctaagctc 24991783  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5352375 - 5352331
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||||||||| ||||||||| | || ||||||||||||    
T  5352375 accttgtatatattatgtattgtccttaccaactgagctaagctc 5352331  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 8615069 - 8615025
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  8615069 accttgcatatattatgcattgtccttaccaactgagctaagctc 8615025  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 21050237 - 21050281
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  21050237 accttgcatatattatgcattgtccttaccaactgagctaagctc 21050281  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 35474013 - 35473954
Alignment:
Q  22 gggttcgaataccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||  | |||||||| |||||||||||||| ||||| | |||||||||||||||    
T  35474013 gggttcgaaccctgaaccttgcatatattatgcattatccttaccaattgagctaagctc 35473954  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 45190267 - 45190308
Alignment:
Q  20 tagggttcgaataccgaaccttgtatatattatgcattgtcc 61  Q
    ||||||| |||| |||||||||| ||||||||||||||||||    
T  45190267 tagggtttgaatcccgaaccttgcatatattatgcattgtcc 45190308  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 5907845 - 5907801
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  5907845 accttgcatatattatgcattgtccttgccaactgagctaagctc 5907801  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 11913790 - 11913754
Alignment:
Q  23 ggttcgaataccgaaccttgtatatattatgcattgt 59  Q
    |||| |||| |||||||||||||||||||||||||||    
T  11913790 ggtttgaatcccgaaccttgtatatattatgcattgt 11913754  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 17283997 - 17283953
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  17283997 accttgcatatattatgcattgtccttaccaactgagctaagctc 17283953  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 20372922 - 20372966
Alignment:
Q  35 gaaccttgtatatattatgcattgtcctttcaaattgagctaagc 79  Q
    |||||||| ||||||||| |||||||||||| ||||||| |||||    
T  20372922 gaaccttgcatatattatacattgtcctttccaattgagttaagc 20372966  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 27127270 - 27127226
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    ||||||||||||||||||||| ||||| | || ||||||||||||    
T  27127270 accttgtatatattatgcattatccttactaactgagctaagctc 27127226  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 38448881 - 38448925
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  38448881 accttgcatatattatgcattgtccttaccaactgagctaagctc 38448925  T

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Target: scaffold1379 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 1686 - 1638
Alignment:
Q  33 ccgaaccttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||||||| ||||| |||||||||||| | | |||||||||||||||    
T  1686 ccgaaccttgcatatactatgcattgtccatactaattgagctaagctc 1638  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 52084 - 52128
Alignment:
Q  35 gaaccttgtatatattatgcattgtcctttcaaattgagctaagc 79  Q
    |||||||| ||||||||| |||||||||||| ||||||| |||||    
T  52084 gaaccttgcatatattatacattgtcctttccaattgagttaagc 52128  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 42349 - 42393
Alignment:
Q  37 accttgtatatattatgcattgtcctttcaaattgagctaagctc 81  Q
    |||||| |||||||||||||||||||| | || ||||||||||||    
T  42349 accttgcatatattatgcattgtccttcccaactgagctaagctc 42393  T

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