View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12108_high_1 (Length: 314)

Name: NF12108_high_1
Description: NF12108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12108_high_1
NF12108_high_1
[»] chr4 (30 HSPs)
chr4 (1-185)||(56422970-56423154)
chr4 (4-87)||(21045228-21045311)
chr4 (4-87)||(44855339-44855422)
chr4 (4-87)||(51930671-51930754)
chr4 (4-87)||(52732686-52732769)
chr4 (4-86)||(43421098-43421180)
chr4 (4-87)||(31817173-31817257)
chr4 (5-87)||(34360100-34360182)
chr4 (5-86)||(54512119-54512200)
chr4 (5-83)||(15501129-15501207)
chr4 (5-87)||(34096111-34096193)
chr4 (5-83)||(37445759-37445837)
chr4 (4-87)||(50072352-50072429)
chr4 (221-280)||(56423220-56423279)
chr4 (4-87)||(39671080-39671163)
chr4 (4-55)||(45903390-45903441)
chr4 (9-87)||(19849179-19849257)
chr4 (5-87)||(36805425-36805507)
chr4 (5-87)||(42672484-42672566)
chr4 (4-87)||(32140960-32141043)
chr4 (4-83)||(45520432-45520511)
chr4 (31-87)||(34124392-34124448)
chr4 (31-87)||(45889660-45889716)
chr4 (4-55)||(51737296-51737347)
chr4 (21-87)||(35928584-35928650)
chr4 (13-87)||(56556259-56556333)
chr4 (46-87)||(54233913-54233954)
chr4 (47-87)||(17499732-17499772)
chr4 (31-87)||(24259708-24259764)
chr4 (31-87)||(47321242-47321298)
[»] chr3 (33 HSPs)
chr3 (5-87)||(26965480-26965562)
chr3 (5-84)||(790174-790253)
chr3 (5-87)||(19552630-19552713)
chr3 (5-87)||(53716104-53716184)
chr3 (5-87)||(37225567-37225649)
chr3 (5-87)||(647564-647646)
chr3 (5-87)||(2662464-2662546)
chr3 (5-87)||(27483165-27483247)
chr3 (4-87)||(2567983-2568066)
chr3 (4-87)||(40048973-40049056)
chr3 (4-87)||(34059966-34060047)
chr3 (4-87)||(44854414-44854495)
chr3 (4-84)||(46362981-46363061)
chr3 (5-87)||(25061794-25061874)
chr3 (5-84)||(38165633-38165712)
chr3 (5-87)||(83394-83476)
chr3 (4-87)||(1340900-1340983)
chr3 (5-86)||(43736842-43736922)
chr3 (4-87)||(35239460-35239543)
chr3 (4-87)||(38457559-38457642)
chr3 (5-87)||(44648382-44648465)
chr3 (5-87)||(36771548-36771630)
chr3 (9-87)||(41287177-41287255)
chr3 (31-87)||(20512492-20512548)
chr3 (31-87)||(54261516-54261572)
chr3 (4-87)||(5244684-5244766)
chr3 (13-87)||(27039426-27039501)
chr3 (4-87)||(43580576-43580661)
chr3 (5-62)||(42791420-42791477)
chr3 (31-87)||(2988606-2988662)
chr3 (31-87)||(51381825-51381881)
chr3 (31-87)||(53560765-53560821)
chr3 (31-87)||(54933201-54933257)
[»] chr7 (21 HSPs)
chr7 (7-87)||(41905909-41905989)
chr7 (4-87)||(18886744-18886827)
chr7 (5-87)||(28044113-28044195)
chr7 (5-87)||(17869336-17869418)
chr7 (5-87)||(34733408-34733490)
chr7 (5-87)||(34002104-34002187)
chr7 (4-83)||(3680894-3680973)
chr7 (5-87)||(42259521-42259603)
chr7 (4-87)||(36447582-36447665)
chr7 (5-87)||(32275294-32275376)
chr7 (22-87)||(40207379-40207444)
chr7 (5-87)||(33056256-33056339)
chr7 (31-87)||(26963580-26963636)
chr7 (31-87)||(32345832-32345888)
chr7 (31-87)||(42010573-42010629)
chr7 (4-87)||(26527369-26527451)
chr7 (5-87)||(22627326-22627408)
chr7 (9-87)||(42121641-42121719)
chr7 (31-87)||(1103583-1103639)
chr7 (31-87)||(10684827-10684883)
chr7 (31-87)||(39117486-39117542)
[»] chr5 (22 HSPs)
chr5 (4-87)||(4967462-4967545)
chr5 (4-87)||(14980022-14980105)
chr5 (4-87)||(31889818-31889901)
chr5 (4-87)||(4011631-4011714)
chr5 (5-87)||(43257832-43257914)
chr5 (4-87)||(12167581-12167664)
chr5 (5-79)||(36660532-36660606)
chr5 (5-87)||(36783454-36783536)
chr5 (4-87)||(39059904-39059987)
chr5 (5-87)||(166621-166703)
chr5 (221-281)||(42975213-42975272)
chr5 (9-87)||(7388168-7388246)
chr5 (9-63)||(34919858-34919912)
chr5 (4-63)||(15400294-15400354)
chr5 (31-87)||(27652317-27652373)
chr5 (4-87)||(31557311-31557395)
chr5 (5-87)||(4751502-4751584)
chr5 (31-87)||(793602-793658)
chr5 (4-48)||(33741764-33741808)
chr5 (31-87)||(33822499-33822555)
chr5 (31-87)||(34171262-34171318)
chr5 (31-87)||(42329542-42329598)
[»] chr2 (19 HSPs)
chr2 (4-87)||(4840698-4840781)
chr2 (5-87)||(1298752-1298834)
chr2 (4-87)||(40410541-40410624)
chr2 (5-87)||(4766184-4766266)
chr2 (5-87)||(7743499-7743581)
chr2 (4-87)||(14378219-14378302)
chr2 (5-87)||(34225848-34225930)
chr2 (5-87)||(40987254-40987336)
chr2 (4-87)||(24775287-24775370)
chr2 (4-87)||(43460871-43460951)
chr2 (31-87)||(16316807-16316863)
chr2 (4-87)||(29795170-29795253)
chr2 (5-87)||(36360347-36360429)
chr2 (8-87)||(1381837-1381916)
chr2 (4-87)||(37106960-37107045)
chr2 (31-87)||(14698088-14698144)
chr2 (31-87)||(43388655-43388711)
chr2 (31-87)||(775882-775938)
chr2 (4-40)||(44228611-44228647)
[»] scaffold0119 (1 HSPs)
scaffold0119 (5-87)||(1641-1723)
[»] chr6 (9 HSPs)
chr6 (5-87)||(26669070-26669152)
chr6 (5-87)||(1924646-1924728)
chr6 (5-87)||(12828653-12828735)
chr6 (4-87)||(23936554-23936638)
chr6 (1-57)||(32258841-32258897)
chr6 (4-87)||(29927306-29927389)
chr6 (5-84)||(34439380-34439460)
chr6 (4-84)||(29915643-29915724)
chr6 (5-87)||(31275613-31275695)
[»] chr8 (21 HSPs)
chr8 (4-87)||(7612596-7612678)
chr8 (4-83)||(2067802-2067881)
chr8 (5-87)||(22601233-22601315)
chr8 (4-87)||(6839305-6839388)
chr8 (5-87)||(30789033-30789115)
chr8 (11-84)||(7129378-7129451)
chr8 (4-84)||(27109791-27109872)
chr8 (4-87)||(36915463-36915546)
chr8 (4-87)||(38329026-38329108)
chr8 (5-87)||(32326697-32326779)
chr8 (5-87)||(11336011-11336087)
chr8 (4-54)||(24732079-24732129)
chr8 (5-87)||(41790113-41790195)
chr8 (5-87)||(45187268-45187350)
chr8 (22-83)||(18666534-18666595)
chr8 (47-87)||(1774085-1774125)
chr8 (31-87)||(8471357-8471413)
chr8 (16-87)||(29931224-29931295)
chr8 (4-87)||(9022493-9022577)
chr8 (31-87)||(14541744-14541800)
chr8 (31-87)||(34168210-34168266)
[»] chr1 (28 HSPs)
chr1 (4-87)||(24040995-24041078)
chr1 (4-87)||(84489-84572)
chr1 (4-87)||(52403574-52403657)
chr1 (5-87)||(5317549-5317632)
chr1 (4-87)||(30006228-30006311)
chr1 (5-87)||(37437375-37437458)
chr1 (4-87)||(43105573-43105656)
chr1 (5-87)||(10690927-10691009)
chr1 (5-63)||(40060878-40060936)
chr1 (5-84)||(1430508-1430588)
chr1 (4-87)||(45749470-45749553)
chr1 (4-87)||(48259834-48259917)
chr1 (9-87)||(28751384-28751462)
chr1 (4-87)||(50349828-50349917)
chr1 (4-84)||(1428967-1429048)
chr1 (4-84)||(11650159-11650239)
chr1 (4-79)||(43929790-43929865)
chr1 (5-87)||(12002344-12002426)
chr1 (13-87)||(48319981-48320055)
chr1 (31-87)||(2459104-2459160)
chr1 (31-87)||(28200220-28200276)
chr1 (5-57)||(50158290-50158342)
chr1 (4-87)||(6332265-6332348)
chr1 (5-87)||(17919793-17919874)
chr1 (5-46)||(6377258-6377299)
chr1 (30-79)||(43755134-43755183)
chr1 (46-87)||(44582791-44582832)
chr1 (31-87)||(254909-254965)
[»] scaffold0072 (1 HSPs)
scaffold0072 (4-87)||(12053-12135)
[»] scaffold0580 (2 HSPs)
scaffold0580 (5-63)||(1696-1754)
scaffold0580 (5-63)||(9435-9493)
[»] scaffold0194 (1 HSPs)
scaffold0194 (4-57)||(8277-8330)
[»] scaffold0047 (1 HSPs)
scaffold0047 (31-87)||(70451-70507)
[»] scaffold0238 (1 HSPs)
scaffold0238 (5-87)||(16012-16093)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 56422970 - 56423154
Alignment:
Q  1 atcgaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaacggagggagtgat 100  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||  |    
T  56422970 atcgaatgaaataatcattggatataacgcttttactaaactgtctttactttataagaaaaagacgaaattaaaattgcattgaaatggaggaagtagt 56423069  T
Q  101 attatttcgtcaaagccaaacctacaaaatatgaataaataaaccatttatagctgatatttctcacactctcaattcaaaaata 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56423070 attatttcgtcaaagccaaacctacaaaatatgaataaataaaccatttatagctgatatttctcacactctcaattcaaaaata 56423154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 21045311 - 21045228
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  21045311 gaatgaaataatcattggatataaggcttttattaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 21045228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 44855422 - 44855339
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||||    
T  44855422 gaatgaaataatcattgaatataacgcttttactaaactgcccttactttataaggaaaagacaaaattaaagttgcattgaaa 44855339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 51930754 - 51930671
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||  || ||||||||||||||||||||    
T  51930754 gaatgaaataataattggatataacgcttttactaaactgcccttactttataagaaaatgacaaaattaaagttgcattgaaa 51930671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 52732769 - 52732686
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||||    
T  52732769 gaatgaaataatcattggatataacacttttactaaactgcccttactttataaggaaaagacaaaattaaagttgcattgaaa 52732686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 43421098 - 43421180
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaa 86  Q
    ||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||| || |||||||||||||||||||    
T  43421098 gaatgaaataatcattggatataatacttttactaaattgctcttactttataagaaaaagacaaaattaaagttgcattgaa 43421180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 31817173 - 31817257
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataag-aaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||    
T  31817173 gaatgaaataatcattggatataacgtttttactaaacttcccttactttataagaaaaaatacaaaattaaagttgcattgaaa 31817257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 34360182 - 34360100
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| || || |||||||||||||||||    
T  34360182 aatgaaataatcattagatataacacttttactaaactgcccttactttataagaaaaagacaaacttaaagttgcattgaaa 34360100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 54512200 - 54512119
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaa 86  Q
    ||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||  || |||||||||||||||||||    
T  54512200 aatgaaataataattggatataacgtttttactaaactgctcttactttataagaaaatgacaaaattaaagttgcattgaa 54512119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 15501129 - 15501207
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcatt 83  Q
    ||||||||||||||| || |||||  |||||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  15501129 aatgaaataatcattagacataacatttttactaaactgcccttactttataagaaaaatacaaacttaaagttgcatt 15501207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 34096193 - 34096111
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| ||  |||| |||||||||||||||||||||||||||||||||| || || |||||||| ||||||||    
T  34096193 aatgaaataatcattagacttaacacttttactaaattgcccttactttataagaaaaagacaaacttaaagtttcattgaaa 34096111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 37445837 - 37445759
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcatt 83  Q
    ||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||| || || |||||||||||||    
T  37445837 aatgaaataatcattagacataacacttttactaaactgcccttactttataagaaaaagacaaatttaaagttgcatt 37445759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 50072429 - 50072352
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||      || ||||||||||||||||||||    
T  50072429 gaatgaaataatcattggatataacgtttttactaaactgcccttactttataag------acaaaattaaagttgcattgaaa 50072352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 280
Target Start/End: Original strand, 56423220 - 56423279
Alignment:
Q  221 atagatttcatatagttcaacaaataattaaaataaaccacttataagacaatatctctt 280  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||    
T  56423220 atagatttcatatagttcaacaaataattaaaataaactacttacaagacgatatctctt 56423279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 39671080 - 39671163
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||| |||||| || ||||| | ||||||||| | || ||||||||||||||||| || || |||||||||||||||||    
T  39671080 gaatgaaattatcattagacataacacatttactaaactacctttactttataagaaaaaaacaaacttaaagttgcattgaaa 39671163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 45903390 - 45903441
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttat 55  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  45903390 gaatgaaataatcattggatataacgcttttattaaactgctcttactttat 45903441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 19849257 - 19849179
Alignment:
Q  9 aaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||| |||  |||||||  |||||||||| |||||| ||||||||||||||| || || |||||||||||||||||    
T  19849257 aaataattattacatataacatttttactaaactgccctcactttataagaaaaaaacaaacttaaagttgcattgaaa 19849179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 36805425 - 36805507
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||| || ||||| |||||| |||||| || || ||||||||| |||||||    
T  36805425 aatgaaataatcattagacataacacttttactaaactgtccttagtttatatgaaaaagacaaacttaaagttgtattgaaa 36805507  T

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Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 42672566 - 42672484
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||| | | | |||||||||||||||| || || ||||||||| |||||||    
T  42672566 aatgaaataatcattagacataacacttttactaaactactcatactttataagaaaaagacaaatttaaagttgtattgaaa 42672484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 32140960 - 32141043
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||| ||||| ||||||||||  |||| || ||  |||| |||||||||||    
T  32140960 gaatgaaataatcattagacataacacttttactaaactgcccctactttataaacaaaagacaaacataaatttgcattgaaa 32141043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 45520432 - 45520511
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcatt 83  Q
    |||| ||||||||||| || ||||| ||||||||||  ||||||||| ||||||||| || || || |||||||||||||    
T  45520432 gaataaaataatcattagacataacacttttactaagctgcccttacattataagaataagacaaacttaaagttgcatt 45520511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 34124448 - 34124392
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  34124448 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 34124392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 45889716 - 45889660
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||| || || |||||||||||||||||    
T  45889716 ttttactaaaataaccttactttataagaaaaaaacaaacttaaagttgcattgaaa 45889660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 51737296 - 51737347
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttat 55  Q
    |||||||||||| ||| || ||||| ||||||||||||| ||||||||||||    
T  51737296 gaatgaaataataattagacataacacttttactaaattacccttactttat 51737347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 35928650 - 35928584
Alignment:
Q  21 gatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||| | |||||||||||||||| | ||||||||||||||| |  || ||||| |||||||||||    
T  35928650 gatatatcacttttactaaattgccatgactttataagaaaaagataaacttaaaattgcattgaaa 35928584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 56556259 - 56556333
Alignment:
Q  13 aatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||| || ||||| |||||||||||||  |||| ||||||||||||||||| || ||||  || ||||||||    
T  56556259 aatcattagacataacacttttactaaattatccttgctttataagaaaaatacaaacttaacattacattgaaa 56556333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Complemental strand, 54233954 - 54233913
Alignment:
Q  46 cttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||| || || |||||||||||||||||    
T  54233954 cttactttataagaaaaagacaaacttaaagttgcattgaaa 54233913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 17499732 - 17499772
Alignment:
Q  47 ttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||| || || |||||||||||||||||    
T  17499732 ttactttataagaaaaagacaaacttaaagttgcattgaaa 17499772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 24259764 - 24259708
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||  || || |||||||||||||||||    
T  24259764 ttttactaaaataaccttactttataagaaaatgacaaacttaaagttgcattgaaa 24259708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 47321298 - 47321242
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||| || |  |||||||||||||||||    
T  47321298 ttttactaaaataaccttactttataagaaaaagacaaccttaaagttgcattgaaa 47321242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 26965480 - 26965562
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  26965480 aatgaaataatcattggatataacgcttttactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 26965562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 790253 - 790174
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattg 84  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||  | |||||||||||||||||    
T  790253 aatgaaataatcattgaatataacgcttttactaaactgcccttactttataagaaaaagtcaaaattaaagttgcattg 790174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 19552713 - 19552630
Alignment:
Q  5 aatgaaataatcattggatataacgctttt-actaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||||||| |||| |||||| || |||||||||||||||||||||| ||||||||||||||||||||    
T  19552713 aatgaaataatcattggatataacgttttttactaaactgtccttactttataagaaaaatacaaaattaaagttgcattgaaa 19552630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 53716184 - 53716104
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||  |||||||||||||||||||    
T  53716184 aatgaaataatcattggatataacgcttttactaaactgctcttactttataagaaaaagac--aattaaagttgcattgaaa 53716104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 37225567 - 37225649
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||  ||||||||||| || ||||||||||||||||||| || ||||||||||||||||||||    
T  37225567 aatgaaataatcattggatataatacttttactaaactgtccttactttataagaaaaagacaaaattaaagttgcattgaaa 37225649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 647564 - 647646
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| ||||||||  |||||||||| |||||||||||||||||||||| || || |||||||||||||||||    
T  647564 aatgaaataatcattagatataacagttttactaaactgcccttactttataagaaaaagacaaacttaaagttgcattgaaa 647646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 2662464 - 2662546
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||| || || |||||||||||||||||    
T  2662464 aatgaaataatcattagacataacacttttactaaattgcccttattttataagaaaaagacaaatttaaagttgcattgaaa 2662546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 27483165 - 27483247
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||| || || |||||||||||||||||    
T  27483165 aatgaaataatcattagacataacacttttactaaatttcccttactttataagaaaaagacaaacttaaagttgcattgaaa 27483247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 2567983 - 2568066
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| |||||||| ||||||| ||| || ||||||||||||||||||| || || |||||||||||||||||    
T  2567983 gaatgaaataatcattagatataacacttttacaaaaatgtccttactttataagaaaaagacaaacttaaagttgcattgaaa 2568066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 40049056 - 40048973
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| |||||| ||||||||| ||||||||||||||||| || || |||||||||||||||||    
T  40049056 gaatgaaataatcattagacataacacttttattaaattgcctttactttataagaaaaagacaaatttaaagttgcattgaaa 40048973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 34060047 - 34059966
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||| ||||||||||| | |||||||||| | |||||||||||||||||||| ||  |||||||||||||||||||    
T  34060047 gaatgaaataataattggatataaagtttttactaaactacccttactttataagaaaaagac--aattaaagttgcattgaaa 34059966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 44854495 - 44854414
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || |  || ||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||    
T  44854495 gaatgaaataatcattagaca--acacttttactaaactgcccttactttataagaaaaatacaaacttaaagttgcattgaaa 44854414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 46362981 - 46363061
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattg 84  Q
    |||||||||||||||| ||  ||||  |||||||||| || |||||||||||||||||||||| || ||||||||||||||    
T  46362981 gaatgaaataatcattagacctaacatttttactaaactgtccttactttataagaaaaatacaaatttaaagttgcattg 46363061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 25061874 - 25061794
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||| | |||||||||||||||||||  || || |||||||||||||||||    
T  25061874 aatgaaataatcattagacataacacttttactaaactacccttactttataagaaaa--acaaacttaaagttgcattgaaa 25061794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 38165633 - 38165712
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattg 84  Q
    |||||||||||||||  | ||||| ||||||||||| || ||||||||||||||||||| || || ||||||||||||||    
T  38165633 aatgaaataatcattaaacataacacttttactaaactgtccttactttataagaaaaagacaaacttaaagttgcattg 38165712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 83476 - 83394
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||| |||||||| || | ||| ||||||||||| | |||||||||||||||||||| || || |||||||||||||||||    
T  83476 aatgaattaatcattagacacaacacttttactaaactacccttactttataagaaaaagacaaacttaaagttgcattgaaa 83394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 1340900 - 1340983
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||| ||| || ||||| ||||| ||||| || | ||||||||||||||||| || || |||||||||||||||||    
T  1340900 gaatgaaataataattagacataacactttttctaaagtgtctttactttataagaaaaagacaaacttaaagttgcattgaaa 1340983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 43736842 - 43736922
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaa 86  Q
    ||||||||||||||| |||||||| ||||||||||| | | |||| ||||||||||||| |  || ||||||||||||||||    
T  43736842 aatgaaataatcattagatataacacttttactaaactactcttattttataagaaaaaga-aaacttaaagttgcattgaa 43736922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 35239543 - 35239460
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||| ||||||||||| |  |||||  |||||||||| || ||||||||||||||||||| || || ||||||||||| |||||    
T  35239543 gaataaaataatcattaggcataacatttttactaaactgtccttactttataagaaaaagacaaacttaaagttgcagtgaaa 35239460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 38457642 - 38457559
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||  | ||||| ||||||||||| |||| ||||||||| ||||||| |  || ||||| |||||||||||    
T  38457642 gaatgaaataatcattacacataacacttttactaaactgccattactttattagaaaaagataaacttaaaattgcattgaaa 38457559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 44648382 - 44648465
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataag-aaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||| |||| ||||||||| || ||||| || || ||||||||| |||||||    
T  44648382 aatgaaataatcattagacataacacttttactaaactgcctttactttatgagaaaaaagacaaacttaaagttgaattgaaa 44648465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 36771548 - 36771630
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||| ||| || ||||   |||||||||| ||| |||| ||||||||||||| || || |||||||||||||||||    
T  36771548 aatgaaataattattagacataatatttttactaaactgctcttattttataagaaaaagacaaacttaaagttgcattgaaa 36771630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 41287255 - 41287177
Alignment:
Q  9 aaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||| || ||||| ||||||||||| ||| |||| |||||| ||||||  | || |||||||||||||||||    
T  41287255 aaataatcattagacataacacttttactaaactgcacttattttatatgaaaaactcaaacttaaagttgcattgaaa 41287177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 20512492 - 20512548
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  20512492 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 20512548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 54261572 - 54261516
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  54261572 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 54261516  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 5244766 - 5244684
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| |||||| |||| |  | |||||| |||||||||| || || |||||||||||||||||    
T  5244766 gaatgaaataatcattagacataacacttttattaaagtctctttactt-ataagaaaaaaacaaacttaaagttgcattgaaa 5244684  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 27039501 - 27039426
Alignment:
Q  13 aatcattggatataacgcttttactaaattgcccttactttat-aagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||  ||||||| ||||||||||| || ||||||||||| || ||||| || || |||||||||||||||||    
T  27039501 aatcattaaatataacacttttactaaagtgtccttactttataaaaaaaaagacaaatttaaagttgcattgaaa 27039426  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 43580661 - 43580576
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactt--tataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||  |||||||  |||||||||| |||||||  ||  |||| |||||| || || |||||||||||||||||    
T  43580661 gaatgaaataatcattacatataacatttttactaaactgcccttgttttatatatgaaaaagacaaatttaaagttgcattgaaa 43580576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 42791477 - 42791420
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaa 62  Q
    ||||||||||||||| || ||||  ||||||||||||| ||||||||| |||| ||||    
T  42791477 aatgaaataatcattagacataatacttttactaaattacccttacttcataaaaaaa 42791420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 2988606 - 2988662
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||| || || || |||||||||||||||||    
T  2988606 ttttactaaaataaccttactttataagaacaagacaaacttaaagttgcattgaaa 2988662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 51381881 - 51381825
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||| ||||| || || |||||||||||||||||    
T  51381881 ttttactaaaataaccttactttataataaaaagacaaacttaaagttgcattgaaa 51381825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 53560821 - 53560765
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||| || |  |||||||||||||||||    
T  53560821 ttttactaaaataaccttactttataagaaaaagacaatcttaaagttgcattgaaa 53560765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 54933201 - 54933257
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||  || || |||||||||||||||||    
T  54933201 ttttactaaaataaccttactttataagaaaatgacaaacttaaagttgcattgaaa 54933257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 6e-31; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 41905909 - 41905989
Alignment:
Q  7 tgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  41905909 tgaaataatcattggatataacgcttttactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 41905989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 18886827 - 18886744
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||||||    
T  18886827 gaatgaaataatcattagatataacgcttttactaaactgcccttactttataaggaaaagacaaaattaaagttgcattgaaa 18886744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 28044113 - 28044195
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || |||||||||||| |||||||    
T  28044113 aatgaaataatcattggatataacgtttttactaaactgcccttactttataagaaaaagacaaaattaaagttgtattgaaa 28044195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 17869418 - 17869336
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||||||| || |||||||||||||||||    
T  17869418 aatgaaataatcattagacataacacttttattaaattgtctttactttataagaaaaatacaaacttaaagttgcattgaaa 17869336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 34733490 - 34733408
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||| | |||||||||||||||||||| || || |||||||||||||||||    
T  34733490 aatgaaataatcattagacataacacttttactaaactacccttactttataagaaaaagacaaacttaaagttgcattgaaa 34733408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 34002104 - 34002187
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgccctt-actttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||| | ||| ||||| ||| ||| ||||||||||||||| || ||||||||||||||||||||    
T  34002104 aatgaaataatcattggatataacacctttgctaaactgcactttactttataagaaaaagacaaaattaaagttgcattgaaa 34002187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 3680894 - 3680973
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcatt 83  Q
    |||||||||||||||| || ||||  ||||||||||| ||| |||||||||||||||||| || || |||||||||||||    
T  3680894 gaatgaaataatcattagacataaaacttttactaaactgctcttactttataagaaaaagacaaatttaaagttgcatt 3680973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 42259521 - 42259603
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||| ||||| ||| || ||||| ||||||||||| |||||||||||||||||||||| || |  |||||||||||||||||    
T  42259521 aatgagataattattagacataacacttttactaaaatgcccttactttataagaaaaagacaagcttaaagttgcattgaaa 42259603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 36447582 - 36447665
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||| | |||||||||| |||||| |||| || | ||||||||||||||||| |  |||||||||||| |||||||    
T  36447582 gaatgaaataattactggatataactcttttattaaactgtctttactttataagaaaaagataaaattaaagttgaattgaaa 36447665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 32275376 - 32275294
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||  | || ||| |||||||||| |||| |||||||||||||||||  | || |||||||||||||||||    
T  32275376 aatgaaataatcattaaacatgacgtttttactaaactgcctttactttataagaaaaaatcaaacttaaagttgcattgaaa 32275294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 40207379 - 40207444
Alignment:
Q  22 atataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||| ||||||||||| |||||||||||||||||||||  || || ||||| |||||||||||    
T  40207379 atataacacttttactaaactgcccttactttataagaaaatgacaaacttaaaattgcattgaaa 40207444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 33056256 - 33056339
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttacttta-taagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||  | ||||| ||||||||||| ||||||||||||| ||||||||| || || |||||  ||||||||||    
T  33056256 aatgaaataatcattaaacataacacttttactaaactgcccttactttattaagaaaaagacaaatttaaaactgcattgaaa 33056339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 26963636 - 26963580
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||| || || |||||||||||||||||    
T  26963636 ttttactaaaataaccttactttataagaaaaagacaaacttaaagttgcattgaaa 26963580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 32345832 - 32345888
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  32345832 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 32345888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 42010573 - 42010629
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |||||||| ||||||||||||| || || |||||||| ||||||||    
T  42010573 ttttactaaactgcccttattttataagaaaaagacaaacttaaagttacattgaaa 42010629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 26527369 - 26527451
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||| |||||||||| || ||||| | ||||||||| |||  ||||||||||||||||| |  || |||||||||||||||||    
T  26527369 gaatgcaataatcattagacataacacctttactaaactgcttttactttataagaaaaa-aaaaatttaaagttgcattgaaa 26527451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 22627326 - 22627408
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||| ||  | ||||| | ||||||||| |||| ||||||||||| || || || || |||||||||||||||||    
T  22627326 aatgaaataatcgttaaacataacacatttactaaactgcctttactttataaaaataagacaaacttaaagttgcattgaaa 22627408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 42121719 - 42121641
Alignment:
Q  9 aaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||| || ||| | ||||||||||| || ||||||||||| ||||||| |   | |||||||||||||||||    
T  42121719 aaataatcattagacatatcacttttactaaactgaccttactttattagaaaaagatacacttaaagttgcattgaaa 42121641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 1103639 - 1103583
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| | |||||||||||||| ||||| || || |||||||| ||||||||    
T  1103639 ttttactaaactacccttactttataaaaaaaaaacaaatttaaagttacattgaaa 1103583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 10684827 - 10684883
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||| || || ||||||||| |||||||    
T  10684827 ttttactaaaataaccttactttataagaaaaagacaaacttaaagttgaattgaaa 10684883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 39117486 - 39117542
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||| || || || |||||||||||||||||    
T  39117486 ttttactaaaataaccttactttataagaataagacaaacttaaagttgcattgaaa 39117542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 4967462 - 4967545
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||    
T  4967462 gaatgaaataatcattggatataacgcttttactaaactgcccttactttataaaaaaaagacaaaattaaagttgcattgaaa 4967545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 14980022 - 14980105
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  14980022 gaatgaaataatcattggatataacacttttaccaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 14980105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 31889901 - 31889818
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||| |||| |||||||| ||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  31889901 gaatgaaataattattgaatataacgttttcactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 31889818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 4011631 - 4011714
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||| ||||||||||||||||||||| |||| ||||| |||||||| ||||||||||||| |  ||||||||||||||||||||    
T  4011631 gaatcaaataatcattggatataacgttttttctaaaatgcccttattttataagaaaaagataaaattaaagttgcattgaaa 4011714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 43257832 - 43257914
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||| ||||||| |||||||||||||||||||| | || || |||||||||||||||||    
T  43257832 aatgaaataatcattagacataacacttatactaaactgcccttactttataagaaatagacaaacttaaagttgcattgaaa 43257914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 12167581 - 12167664
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || | ||| ||||||||||| |||||||||||||||||||||   | || |||||||||||||||||    
T  12167581 gaatgaaataatcattagacaaaacacttttactaaactgcccttactttataagaaaaggtcaaacttaaagttgcattgaaa 12167664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 36660606 - 36660532
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttg 79  Q
    ||||||||||||||| || ||||| ||||||||||| || ||||||||||||||||||| || || |||||||||    
T  36660606 aatgaaataatcattagacataacacttttactaaaatgtccttactttataagaaaaagacaaacttaaagttg 36660532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 36783536 - 36783454
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || |||||  ||||||||||||||||||||||  || |||||| || || |||||||||||||||||    
T  36783536 aatgaaataatcattagacataacatttttactaaattgcccttacttgttatgaaaaagacaaatttaaagttgcattgaaa 36783454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 39059987 - 39059904
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||| | |||||  |||||| |||||| || || |||||||||||||||||    
T  39059987 gaatgaaataatcattagacataacacttttactaaactacccttgttttatatgaaaaaaacaaacttaaagttgcattgaaa 39059904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 166621 - 166703
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||| |||||||   ||||| |||||| || || |||||||||||||||||    
T  166621 aatgaaataatcattagaaataacacttttactaaactgcccttgtattatatgaaaaagacaaacttaaagttgcattgaaa 166703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 42975213 - 42975272
Alignment:
Q  221 atagatttcatatagttcaacaaataattaaaataaaccacttataagacaatatctcttt 281  Q
    ||||||||||||| ||||||||||||| ||||| |||||| ||| ||||||||||||||||    
T  42975213 atagatttcatatggttcaacaaataagtaaaa-aaaccatttacaagacaatatctcttt 42975272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 7388168 - 7388246
Alignment:
Q  9 aaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||| || ||||   ||||||||||||| ||||| ||||||||||||| |  || |||||||||||||||||    
T  7388168 aaataatcattagacataatatttttactaaattgtccttattttataagaaaaagataaatttaaagttgcattgaaa 7388246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 34919912 - 34919858
Alignment:
Q  9 aaataatcattggatataacgcttttactaaattgcccttactttataagaaaaa 63  Q
    |||||||||||||| ||| |  |||||||||| ||||||||||||||||||||||    
T  34919912 aaataatcattggacatagcaattttactaaactgcccttactttataagaaaaa 34919858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 15400354 - 15400294
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttact-aaattgcccttactttataagaaaaa 63  Q
    |||||||||||| ||| |||||||| |||||||| ||||| || |||||||||||||||||    
T  15400354 gaatgaaataattattagatataacacttttactaaaattccctttactttataagaaaaa 15400294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 27652317 - 27652373
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||| || || |||||||||||||||||    
T  27652317 ttttactaaaataaccttactttataagaaaaagacaaatttaaagttgcattgaaa 27652373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 31557311 - 31557395
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgccctt-actttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||  ||||||  |||||| ||||   ||||| ||||||||||||||| || || |||||||||||||||||    
T  31557311 gaatgaaataatcattaaatataatacttttagtaaacaaccctttactttataagaaaaagacaaacttaaagttgcattgaaa 31557395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 4751502 - 4751584
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| |||||||||||   |||||  |||||| |||||| || || ||||||||| |||||||    
T  4751502 aatgaaataatcattagacataacacttttactaaacaacccttgttttatatgaaaaaaacaaacttaaagttgaattgaaa 4751584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 793602 - 793658
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||| || || || |||||||||||||||||    
T  793602 ttttactaaaataaccttactttataagaacaagacaaacttaaagttgcattgaaa 793658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 33741808 - 33741764
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgccctt 48  Q
    |||||||||||||||| |||||| |  ||||||||||||||||||    
T  33741808 gaatgaaataatcattagatataccatttttactaaattgccctt 33741764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 33822499 - 33822555
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||| || || || |||||||||||||||||    
T  33822499 ttttactaaaataaccttactttataagaacaagacaaacttaaagttgcattgaaa 33822555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 34171318 - 34171262
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||| || || || |||||||||||||||||    
T  34171318 ttttactaaaataaccttactttataagaacaagacaaacttaaagttgcattgaaa 34171262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 42329542 - 42329598
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||| || || || |||||||||||||||||    
T  42329542 ttttactaaaataaccttactttataagaataagacaaacttaaagttgcattgaaa 42329598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 4840698 - 4840781
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  4840698 gaatgaaataatcattggatataacgtttttactaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 4840781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 1298752 - 1298834
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1298752 aatgaaataatcattgaatataacgtttttactaaattgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 1298834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 40410624 - 40410541
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  40410624 gaatgacataatcattggatataacgcttttattaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 40410541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 4766184 - 4766266
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||||||| | |||||||| |||| ||||||||||||||||| || ||||||||||||||||||||    
T  4766184 aatgaaataatcattggatataacgttattactaaactgcctttactttataagaaaaagacaaaattaaagttgcattgaaa 4766266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 7743581 - 7743499
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||  |||||||| |||||||||| ||||||||||||||||||||||| || || |||||||||||||||||    
T  7743581 aatgaaataatcatcagatataacacttttactaagttgcccttactttataagaaaaagacaaatttaaagttgcattgaaa 7743499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 14378219 - 14378302
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||| |  || |||||||||||||||||    
T  14378219 gaatgaaataatcatttaatataacacttttactaaactgcccttactttataagaaaaagataaatttaaagttgcattgaaa 14378302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 34225930 - 34225848
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||   ||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  34225930 aatgaaataatcattagacataataattttactaaattgcccttactttataagaaaaagacaaacttaaagttgcattgaaa 34225848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 40987254 - 40987336
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||| |  || |||||||||||||||||    
T  40987254 aatgaaataatcattagacataacacttttactaaattgtccttactttataagaaaaagataaatttaaagttgcattgaaa 40987336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 24775370 - 24775287
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||| || || ||||||||  |||||||    
T  24775370 gaatgaaataatcattagatataacacttttactaaaatgctcttactttataagaaaaaaacaaacttaaagttatattgaaa 24775287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 43460951 - 43460871
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||| |   ||||||||||| ||||||||||||||||| |||| || |||||||||||| |||||||    
T  43460951 gaatgaaataatcattggataca---cttttactaaactgcccttactttataaggaaaagacaaaattaaagttgtattgaaa 43460871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 16316863 - 16316807
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  16316863 ttttactaaattgcccttactgtataagaaaaagacaaaattaaagttgcattgaaa 16316807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 29795170 - 29795253
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||  ||||||||||| |||||||| ||||||||||||| || |  |||||||||||||||||    
T  29795170 gaatgaaataatcattagacataatacttttactaaactgcccttattttataagaaaaagacaactttaaagttgcattgaaa 29795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 36360347 - 36360429
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||| |||||||| ||||||||||||| |  || ||||||||| |||||||    
T  36360347 aatgaaataatcattagacataacacttttactaaactgcccttattttataagaaaaagataaacttaaagttgtattgaaa 36360429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 1381916 - 1381837
Alignment:
Q  8 gaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||| || ||||| ||||||||||| ||| |||||||||||||||||| |  || ||||| |||||||||||    
T  1381916 gaaataatcattagacataacacttttactaaactgctcttactttataagaaaaagaaaaacttaaaattgcattgaaa 1381837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 37107045 - 37106960
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataag--aaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||| ||| || | ||| |||||||||||||||||||||||||||||  ||||| |  || |||||||||||||||||    
T  37107045 gaatgaaataattatttgacacaacacttttactaaattgcccttactttataagcaaaaaagaaaaacttaaagttgcattgaaa 37106960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 14698144 - 14698088
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  14698144 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 14698088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 43388655 - 43388711
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  43388655 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 43388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 775882 - 775938
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||| ||||||||||||| || || |||||||||||||||||    
T  775882 ttttactaaaataaccttaatttataagaaaaagacaaacttaaagttgcattgaaa 775938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 44228647 - 44228611
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaa 40  Q
    |||||||||||||||| |||||||| |||||||||||    
T  44228647 gaatgaaataatcattagatataacacttttactaaa 44228611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 1723 - 1641
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1723 aatgaaataattattggatataacgtttttactaaattgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 1641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 26669070 - 26669152
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  26669070 aatgaaataattattggatataacgtttttactaaattgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 26669152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 1924646 - 1924728
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||||||| |||||||||| | | ||||||||||||| ||||||| ||||||||||||||||||||    
T  1924646 aatgaaataatcattggatataacgtttttactaaacttctcttactttataaggaaaatacaaaattaaagttgcattgaaa 1924728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 12828653 - 12828735
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||| || |  |||||||||||||||||    
T  12828653 aatgaaataatcattagacataacacttttactaaactgcccttactttataagaaaaagacaagcttaaagttgcattgaaa 12828735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 23936554 - 23936638
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgccc-ttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| ||||||||  ||||||| |||||||| ||||||||||||||||| || || |||||||||||||||||    
T  23936554 gaatgaaataatcattagatataacatttttactgaattgccctttactttataagaaaaaaacaaatttaaagttgcattgaaa 23936638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 32258897 - 32258841
Alignment:
Q  1 atcgaatgaaataatcattggatataacgcttttactaaattgcccttactttataa 57  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  32258897 atcgattgaaataatcattggatataacgcttttactaaactgcccttgctttataa 32258841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 29927389 - 29927306
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||  |  ||||||||||||||||||| || || |||||||||||||||||    
T  29927389 gaatgaaataatcattagacataacacttttactaacatatccttactttataagaaaaagacaaacttaaagttgcattgaaa 29927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 34439380 - 34439460
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgccc-ttactttataagaaaaatacgaaattaaagttgcattg 84  Q
    ||||||||||||||| ||||||||  ||||| |||||||||| ||| ||||||||||||| || ||  |||||||||||||    
T  34439380 aatgaaataatcattagatataacatttttattaaattgccctttattttataagaaaaagacaaacataaagttgcattg 34439460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 29915724 - 29915643
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgccctt-actttataagaaaaatacgaaattaaagttgcattg 84  Q
    |||||||||||| ||| || ||||| ||||||||||| |||| || ||||||||||||||| || ||  |||||||||||||    
T  29915724 gaatgaaataataattagaaataacacttttactaaactgccatttactttataagaaaaagacaaacataaagttgcattg 29915643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 31275613 - 31275695
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |||| ||  |||| ||||||| ||| |||||||  |||||| |||||| || || |||||||||||||||||    
T  31275613 aatgaaataaccattagacgtaacacttttaccaaactgcccttgttttatatgaaaaagacaaacttaaagttgcattgaaa 31275695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 7612678 - 7612596
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || ||||||||||||||||||||    
T  7612678 gaatgaaataatcattggatataacgcttt-actaaactgcccttactttataagaaaaagacaaaattaaagttgcattgaaa 7612596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 2067881 - 2067802
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcatt 83  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||||||||||||| |||| || ||||||||||||||||    
T  2067881 gaatgaaataatcatttgatataacgcttttattaaactgcccttactttataaggaaaagaccaaattaaagttgcatt 2067802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 22601315 - 22601233
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| |||||||||||||| | ||||||||||||||||| || || |||||||||||||||||    
T  22601315 aatgaaataatcattagacataactcttttactaaattgtctttactttataagaaaaagacaaacttaaagttgcattgaaa 22601233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 6839388 - 6839305
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| |||||||||||||||| ||||||||||||||||| || ||  |||| |||||||||||    
T  6839388 gaatgaaataatcattagacataacacttttactaaattgcctttactttataagaaaaagacaaacataaaattgcattgaaa 6839305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 30789115 - 30789033
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| |||||| ||||||| ||||||||||||||||||| || || ||||||||| |||||||    
T  30789115 aatgaaataatcattagacataacacttttattaaattgtccttactttataagaaaaagacaaatttaaagttgtattgaaa 30789033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 7129451 - 7129378
Alignment:
Q  11 ataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattg 84  Q
    |||||||||| ||||||||||||||||||| ||   |||||||||||||| || || |||||||||||||||||    
T  7129451 ataatcattgaatataacgcttttactaaactgattttactttataagaataagacaaaattaaagttgcattg 7129378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 27109791 - 27109872
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattg-cccttactttataagaaaaatacgaaattaaagttgcattg 84  Q
    |||||||||||||||| |||||||| |||||||||||||| |  ||||||||||||||||  || || ||||||||||||||    
T  27109791 gaatgaaataatcattagatataacacttttactaaattgtcttttactttataagaaaaggacaaacttaaagttgcattg 27109872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 36915546 - 36915463
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||   ||||||||||||||||||  |||||| |||||| || || |||||||||||||||||    
T  36915546 gaatgaaataatcattagacataatatttttactaaattgcccttgttttatatgaaaaagacaaacttaaagttgcattgaaa 36915463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 38329026 - 38329108
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||| || |||||||||||||  |||| || || |||||||||||||||||    
T  38329026 gaatgaaataatcattagacataacacttttactaaactg-ccttactttataatcaaaagacaaacttaaagttgcattgaaa 38329108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 32326697 - 32326779
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| ||  |||| ||||||||||| |||||||  |||||| |||||| || || |||||||||||||||||    
T  32326697 aatgaaataatcattagacgtaacacttttactaaactgcccttgttttatatgaaaaagacaaatttaaagttgcattgaaa 32326779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 11336011 - 11336087
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||| ||| |||| |||||||| |||||||||||||      ||||||||||||||| || ||||||||||||||||||||    
T  11336011 aatgaagtaaccattcgatataacacttttactaaatt------actttataagaaaaagacaaaattaaagttgcattgaaa 11336087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 24732129 - 24732079
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttacttta 54  Q
    |||||||||| |||||||||||||| ||||||||||| ||||| |||||||    
T  24732129 gaatgaaatagtcattggatataacacttttactaaactgcccctacttta 24732079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 41790113 - 41790195
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||  |||||| ||||||| | || |||||||||||||| || || ||||||||| |||||||    
T  41790113 aatgaaataatcattagacataatacttttattaaattgtctttgctttataagaaaaagacaaatttaaagttggattgaaa 41790195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 45187268 - 45187350
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || || || ||||||||||| || ||||  ||||||||||||| || || |||||||||| ||||||    
T  45187268 aatgaaataatcattagacatgacacttttactaaactgtccttgttttataagaaaaagacaaacttaaagttgctttgaaa 45187350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 18666534 - 18666595
Alignment:
Q  22 atataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcatt 83  Q
    ||||||| ||||||||||| || ||||||||||||||||||| || | | ||||||||||||    
T  18666534 atataacacttttactaaactgtccttactttataagaaaaagacaacactaaagttgcatt 18666595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 1774085 - 1774125
Alignment:
Q  47 ttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||| || ||||||||||||||||||||    
T  1774085 ttactttataagaaaaagacaaaattaaagttgcattgaaa 1774125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 8471413 - 8471357
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  ||||||||||||||||||| || || |||||||||||||||||    
T  8471413 ttttactaaaataaccttactttataagaaaaagacaaacttaaagttgcattgaaa 8471357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 29931224 - 29931295
Alignment:
Q  16 cattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||| ||||||| |||||| |||| |||| ||| ||||||||| ||| |  ||||||||||||||||||||    
T  29931224 cattgaatataacacttttattaaactgcctttattttataagagaaagaaaaaattaaagttgcattgaaa 29931295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 9022577 - 9022493
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaatt-aaagttgcattgaaa 87  Q
    ||||||| |||||||| || ||||| ||||||||||| ||| |||  |||||| |||||| || || || |||||||||||||||    
T  9022577 gaatgaattaatcattagacataacacttttactaaactgcacttgttttatatgaaaaagacaaacttaaaagttgcattgaaa 9022493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 14541744 - 14541800
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||| || || || |||||||||||||||||    
T  14541744 ttttactaaaataaccttactttataagaacaagacaaacttaaagttgcattgaaa 14541800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 34168210 - 34168266
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||| || || || |||||||||||||||||    
T  34168210 ttttactaaaataaccttactttataagaacaagacaaacttaaagttgcattgaaa 34168266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 24040995 - 24041078
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||| || || |||||||||||||||||    
T  24040995 gaatgaaataatcattagacataacacttttactaaactgcccttactttataagaaaaagacaaacttaaagttgcattgaaa 24041078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 84489 - 84572
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||| || ||||||||||||||||||| || || |||||||||||||||||    
T  84489 gaatgaaataatcattagacataacacttttactaaaatgtccttactttataagaaaaagacaaacttaaagttgcattgaaa 84572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 52403657 - 52403574
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||||||||||||| || ||| |||| ||||||||||||||||| |||| || |||||||||||||| |||||    
T  52403657 gaatgaaataatcattggatataacactgttattaaactgcccttactttataaggaaaagacaaaattaaagttgcactgaaa 52403574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 5317549 - 5317632
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattg-cccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| || ||||| |||||||||||||| |||||| ||||||||||||| || || |||||||||||||||||    
T  5317549 aatgaaataatcattagacataacacttttactaaattgccccttattttataagaaaaagacaaacttaaagttgcattgaaa 5317632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 30006311 - 30006228
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| || |||||||||||| |||||||||||||||||| |  || |||||||||||||||||    
T  30006311 gaatgaaataatcattagacataacactattactaaattgctcttactttataagaaaaagataaatttaaagttgcattgaaa 30006228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 37437375 - 37437458
Alignment:
Q  5 aatgaaataatcattggatataacgctttt-actaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  37437375 aatgaaatattcattagacataacactttttactaaattgcccttactttataagaaaaagacaaacttaaagttgcattgaaa 37437458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 43105573 - 43105656
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||||| || ||| ||||||||||||| || || ||||| |||||||||||    
T  43105573 gaatgaaataatcattagacataacacttttactaaattaccattattttataagaaaaagacaaacttaaaattgcattgaaa 43105656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 10690927 - 10691009
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||| ||||||||  |||||||||| ||| |||||||  ||||||||| || || |||||||||||||||||    
T  10690927 aatgaaataatcattagatataacatttttactaaactgcacttacttcgtaagaaaaagacaaacttaaagttgcattgaaa 10691009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 40060878 - 40060936
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaa 63  Q
    ||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||    
T  40060878 aatgaaataatgattagacataacacttttactaaattgcccttactttataagaaaaa 40060936  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 84
Target Start/End: Original strand, 1430508 - 1430588
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgccctt-actttataagaaaaatacgaaattaaagttgcattg 84  Q
    ||||||||||| ||| |||||||| ||||||||||| ||| ||| ||||||||||||||| || || ||||||||||||||    
T  1430508 aatgaaataataattagatataacacttttactaaactgcactttactttataagaaaaagacaaacttaaagttgcattg 1430588  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 45749470 - 45749553
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||| ||||||||||| || ||||| |||||||||||  ||||||||||||||||||||| || || ||||| || ||||||||    
T  45749470 gaataaaataatcattagacataacacttttactaaaccgcccttactttataagaaaaagacaaacttaaatttacattgaaa 45749553  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 48259834 - 48259917
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||| || || ||||| |||||| |||| ||||||| |||||||||||||| |  || |||||||||||||||||    
T  48259834 gaatgaaataatcgttagacataacacttttattaaactgcccttgctttataagaaaaagataaacttaaagttgcattgaaa 48259917  T

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Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 28751384 - 28751462
Alignment:
Q  9 aaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||| || |||||  |||||||||| |||||||||||||||||||||  || || |||||||| ||||||||    
T  28751384 aaataatcattagacataacatttttactaaactgcccttactttataagaaaaggacaaacttaaagttacattgaaa 28751462  T

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Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 50349828 - 50349917
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttact------ttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||| ||||||||||      |||||||||||| || || |||||||||||||||||    
T  50349828 gaatgaaataatcattagacataacacttttactaaactgcccttactttataattataagaaaaagacaaacttaaagttgcattgaaa 50349917  T

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Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 1429048 - 1428967
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgccc-ttactttataagaaaaatacgaaattaaagttgcattg 84  Q
    |||||||||||| ||| |||||||| ||||||||||| ||||| ||||||||||||||||  || || ||||||||| ||||    
T  1429048 gaatgaaataattattagatataacacttttactaaactgccctttactttataagaaaaggacaaacttaaagttgaattg 1428967  T

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Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 11650239 - 11650159
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattg 84  Q
    ||||||||||| |||| ||||||    |||||||||| ||||||||||||| |||||||| || || ||||||||||||||    
T  11650239 gaatgaaataaccattagatatagtatttttactaaactgcccttactttaaaagaaaaagacaaacttaaagttgcattg 11650159  T

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Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 79
Target Start/End: Complemental strand, 43929865 - 43929790
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttg 79  Q
    |||||||||||||||| || ||||| ||||||||| | | || ||||||||||||||||| || || |||||||||    
T  43929865 gaatgaaataatcattagacataacacttttactatacttccattactttataagaaaaagactaacttaaagttg 43929790  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 12002426 - 12002344
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||||||||||  || ||||  ||||||||||| |||||||  |||||| |||||| || || |||||||||||||||||    
T  12002426 aatgaaataatcatcagacataatacttttactaaactgcccttgttttatatgaaaaagacaaacttaaagttgcattgaaa 12002344  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 48319981 - 48320055
Alignment:
Q  13 aatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    ||||||| || ||||  |||||||||||||||||||||||||||| | ||| || || |||||||||||| ||||    
T  48319981 aatcattagacataagacttttactaaattgcccttactttataaaagaaagacaaacttaaagttgcatcgaaa 48320055  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 2459160 - 2459104
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  2459160 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 2459104  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 28200220 - 28200276
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  28200220 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 28200276  T

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Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 50158290 - 50158342
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataa 57  Q
    |||| ||||||||||||||||||| ||||||||||| | ||||| ||||||||    
T  50158290 aatgcaataatcattggatataacacttttactaaacttcccttgctttataa 50158342  T

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Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 6332348 - 6332265
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||| |||| ||  |||||| |||||| || ||  ||||||| ||||||||    
T  6332348 gaatgaaataatcattagacataacacttttactaaactgcctttgttttatatgaaaaagacaaacataaagttacattgaaa 6332265  T

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Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 17919793 - 17919874
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||  | ||||| ||||||||||| |||||||  ||||||  ||||| || || |||||||||||||||||    
T  17919793 aatgaaataatcatta-acataacacttttactaaactgcccttgttttatattaaaaagacaaacttaaagttgcattgaaa 17919874  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 6377258 - 6377299
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgccc 46  Q
    ||||||||||||||| || ||||| |||||||||||||||||    
T  6377258 aatgaaataatcattagacataacacttttactaaattgccc 6377299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 43755183 - 43755134
Alignment:
Q  30 cttttactaaattgcccttactttataagaaaaatacgaaattaaagttg 79  Q
    |||||||||||| |||||||||| |||||||||| || || |||||||||    
T  43755183 cttttactaaatcgcccttacttaataagaaaaagacaaacttaaagttg 43755134  T

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Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 87
Target Start/End: Original strand, 44582791 - 44582832
Alignment:
Q  46 cttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||||| || || |||||||||||||||||    
T  44582791 cttactttataagaaaaagacaaacttaaagttgcattgaaa 44582832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 254909 - 254965
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  || |||||||||||||||| || || |||||||||||||||||    
T  254909 ttttactaaaataaccctactttataagaaaaagacaaacttaaagttgcattgaaa 254965  T

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Target: scaffold0072 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 12053 - 12135
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||||||| || || |||||||||||||||||    
T  12053 gaatgaaataatcattagacataacacttttactaaactgcc-ttactttataagaaaaagacaaacttaaagttgcattgaaa 12135  T

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Target: scaffold0580 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 1754 - 1696
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaa 63  Q
    ||||||||||||||||||||||||  |||||||||| || |||||||||||||||||||    
T  1754 aatgaaataatcattggatataacatttttactaaactgaccttactttataagaaaaa 1696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 9493 - 9435
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaa 63  Q
    ||||||||||||||||||||||||  |||||||||| || |||||||||||||||||||    
T  9493 aatgaaataatcattggatataacatttttactaaactgaccttactttataagaaaaa 9435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 8330 - 8277
Alignment:
Q  4 gaatgaaataatcattggatataacgcttttactaaattgcccttactttataa 57  Q
    |||||||||||||||||||||||| |||||||||||| ||||||| ||||||||    
T  8330 gaatgaaataatcattggatataaggcttttactaaactgcccttgctttataa 8277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 70451 - 70507
Alignment:
Q  31 ttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||| |  |||||||||||||||||||||| || ||||||||| |||||||    
T  70451 ttttactaaaataaccttactttataagaaaaatacaaacttaaagttgtattgaaa 70507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 16012 - 16093
Alignment:
Q  5 aatgaaataatcattggatataacgcttttactaaattgcccttactttataagaaaaatacgaaattaaagttgcattgaaa 87  Q
    |||||||||||||||  |||||||  |||||||||| | || ||||||||||| ||||  || || |||||||||||||||||    
T  16012 aatgaaataatcattatatataacatttttactaaactacctttactttataa-aaaatgacaaacttaaagttgcattgaaa 16093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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