View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12108_high_3 (Length: 207)
Name: NF12108_high_3
Description: NF12108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12108_high_3 |
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| [»] scaffold0088 (1 HSPs) |
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| [»] scaffold0725 (1 HSPs) |
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Alignment Details
Target: scaffold0088 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 27418 - 27591
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27418 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
27517 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaagatatgattgcatagg |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27518 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaagatatgattgcatagg |
27591 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0725 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0725
Description:
Target: scaffold0725; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 2 - 174
Target Start/End: Original strand, 1503 - 1675
Alignment:
| Q |
2 |
cacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccaccac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
1503 |
cacacaagaccatcggagaacaacaaccttaacgttggccccgacagatctggcgtttagaggtggtgcagaggactggtgtcactagtcgcaccaccac |
1602 |
T |
|
| Q |
102 |
cctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaagatatgattgcatagg |
174 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1603 |
cctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaagatatgattgcatagg |
1675 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 38499614 - 38499772
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| |
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|
| T |
38499614 |
acacacaagaccatcggagaacagcaaccttaacgccggcgccgacagatctggcgtttagaggtggtgcagaggattggtgtcactcgtcgcaccacca |
38499713 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaag |
159 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38499714 |
ccctgaccggctacatcttgcaaattgagggtttggattggggtggaagaaggtgtaag |
38499772 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 10182478 - 10182632
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| | | | | |||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||| |
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|
| T |
10182478 |
acacacgagaccatcggagaacaac---cttaacgccgacgctgacagatctggcatttagaggtggtgcagaagactggtgtcactcgtcgcaccacca |
10182574 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaa |
158 |
Q |
| |
|
|||| |||| ||||||||| | ||||||||| ||||||||| ||||||||| |||||| |
|
|
| T |
10182575 |
cccttaccgactacatcttataaattgaggggttggattggagtggaagaaggtgtaa |
10182632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 47897084 - 47897242
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| | ||||| | |||||||||||| |
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|
| T |
47897084 |
acacacaagaccatcggagaacaacaaccttaacgctggcaccgacagatctggcgtttagaggtggtgcggaggaccgctgtcactcgtcgcaccacca |
47897183 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaag |
159 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
47897184 |
ccctgaccggctacatcttgcaaattgagggtttggattgaggtggaagaaggtgtaag |
47897242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 2 - 159
Target Start/End: Complemental strand, 27786424 - 27786267
Alignment:
| Q |
2 |
cacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccaccac |
101 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| |
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|
| T |
27786424 |
cacacaagaccatcggagaacaacaaccataacgcaggcgccgacagatctggcgtttagaggtggtgcggaggactggtgtcactcgtcgcaccaccac |
27786325 |
T |
|
| Q |
102 |
cctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaag |
159 |
Q |
| |
|
||| |||| ||||||||||| ||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
27786324 |
cctgaccgactacatcttgtaaattgagggtttgtattgaggtggaagaaggtgtaag |
27786267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 8039624 - 8039774
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
|||||||||||||||| |||||| |||||||| || ||| |||||| |||| ||||||||||||||||| |||||||||||||| | ||| |||||||| |
|
|
| T |
8039624 |
acacacaagaccatcgaagaacagtaaccttaacgtcggcgccgacatatctagcgtttagaggtggtgcggaggactggtgtcacttgtcacaccacca |
8039723 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaag |
159 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8039724 |
ccctgaccggctac--------aattgagggtttggattggggtggaagaaggtgtaag |
8039774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 1e-52; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 32979656 - 32979800
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |
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|
| T |
32979656 |
acacacaagaccatcggagaacaacatccttaacgttggcgccgacagatatggcgtttagaggtggtgcagaggactggtgtcactcgtcgcaccacca |
32979755 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtg |
145 |
Q |
| |
|
|||| |||||||||||||||| ||| ||||||||| ||||||||| |
|
|
| T |
32979756 |
ccctgaccggctacatcttgtaaatcgagggtttgaattggggtg |
32979800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 10366188 - 10366307
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| || ||| || |||||||||| ||||||||||||||| ||||||||||||| | || ||||||||| |
|
|
| T |
10366188 |
acacacaagaccatcagagaacagcaaccttaacgtcggcgcctacagatctggtgtttagaggtggtgcgaaggactggtgtcactcgttgcaccacca |
10366287 |
T |
|
| Q |
101 |
ccctaaccggctacatcttg |
120 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
10366288 |
ccctaactggctacatcttg |
10366307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 57 - 159
Target Start/End: Original strand, 36583082 - 36583184
Alignment:
| Q |
57 |
tttagaggtggtgcagaggactggtgtcattagtcgcaccaccaccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgt |
156 |
Q |
| |
|
||||||||||||| |||||||||||||| | ||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||| |||| |
|
|
| T |
36583082 |
tttagaggtggtgtggaggactggtgtcactcgtcgcaccaccaccctaactgactacatcttgtgaattgggggtttggattagggtggaagaaggtgt |
36583181 |
T |
|
| Q |
157 |
aag |
159 |
Q |
| |
|
||| |
|
|
| T |
36583182 |
aag |
36583184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 46742611 - 46742455
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| | ||| ||||| |||||||||||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
46742611 |
acacacaagaccatcggagaacagcaaccttaacgccggcgtcgacaaatctggcgtttagaggtggtgcggaggactggtgtcactcgtcgcaccacca |
46742512 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgta |
157 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
46742511 |
ccctgaccggctacatcttgtaaattgagggtttggattggggtggaagaaggtgta |
46742455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 11387881 - 11387995
Alignment:
| Q |
45 |
acagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccaccaccctaaccggctacatcttgtgaattgagggtttggattggggt |
144 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| | ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
11387881 |
acagatctggcgtttagaggtggtgcggaggactggtgtcactcgtcgcaccaccaccctgagcggctacatcttgcaaattgagggtttggatttgggt |
11387980 |
T |
|
| Q |
145 |
ggaagaatgtgtaag |
159 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
11387981 |
ggaagaaggtgtaag |
11387995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 9567204 - 9567352
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||| || |||| ||||||||||||||||||| |||||||||||||| | |||||| ||||| |
|
|
| T |
9567204 |
acacacaagaccatcggagaacaacaaccttaacgctggcgttgatagatttggcgtttagaggtggtgcggaggactggtgtcactcgtcgcaacacca |
9567303 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaag |
149 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9567304 |
cccgaacaggctacatcttgtgaattgagggtttggattggggtggaag |
9567352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 1533689 - 1533846
Alignment:
| Q |
1 |
acacacaagaccatcggagaacaacaaccttaatgttggcaccgacagatctggcgtttagaggtggtgcagaggactggtgtcattagtcgcaccacca |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||| | | | ||||| ||||| |||||||||||| || |||||||||||||| | |||||||| || |
|
|
| T |
1533689 |
acacataagactatcggagaacagcaaccttaacgccgacgtcgacaaatctgatgtttagaggtggcgcggaggactggtgtcactcatcgcaccatca |
1533788 |
T |
|
| Q |
101 |
ccctaaccggctacatcttgtgaattgagggtttggattggggtggaagaatgtgtaa |
158 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
1533789 |
ccctgaccggctacatcttgtaaattgagggtttcgattggggtgaaagaaggtgtaa |
1533846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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