View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12108_low_3 (Length: 297)

Name: NF12108_low_3
Description: NF12108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12108_low_3
NF12108_low_3
[»] scaffold0057 (1 HSPs)
scaffold0057 (188-282)||(77743-77837)
[»] chr5 (6 HSPs)
chr5 (15-118)||(38699290-38699393)
chr5 (118-170)||(38699254-38699306)
chr5 (192-282)||(43254452-43254542)
chr5 (188-240)||(22668643-22668695)
chr5 (23-78)||(38696593-38696648)
chr5 (133-170)||(38696250-38696287)
[»] chr7 (4 HSPs)
chr7 (191-282)||(11896693-11896784)
chr7 (190-257)||(25001579-25001646)
chr7 (200-282)||(24437085-24437167)
chr7 (191-257)||(22792708-22792774)
[»] chr8 (2 HSPs)
chr8 (191-281)||(18621581-18621671)
chr8 (205-257)||(37406603-37406655)
[»] chr3 (2 HSPs)
chr3 (188-280)||(49723262-49723354)
chr3 (191-281)||(27429969-27430059)
[»] chr1 (1 HSPs)
chr1 (190-280)||(11777728-11777817)
[»] chr6 (2 HSPs)
chr6 (227-281)||(34221978-34222032)
chr6 (237-281)||(3340539-3340583)
[»] chr4 (1 HSPs)
chr4 (192-278)||(16531542-16531628)
[»] chr2 (1 HSPs)
chr2 (188-275)||(15010288-15010375)


Alignment Details
Target: scaffold0057 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 77743 - 77837
Alignment:
Q  188 acggtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaagagc 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  77743 acggtaaacaatagcttaacatttcataaggcagagaatattacaaacagttagtgttaacattgaaggggtatttcccaacaattttgaagagc 77837  T

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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 38699393 - 38699290
Alignment:
Q  15 aaatgaaattttccaagaaaaaagaaaatacatgtatcaaaacaatttcttttcttaatttatannnnnnnaaaagaagatagaaacaacacttggaata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  38699393 aaatgaaattttccaagaaaaaagaaaatacatgtatcaaaacaatttcttttcttaatttatattttttaaaaagaagatagaaacaacacttggaata 38699294  T
Q  115 tcaa 118  Q
    ||||    
T  38699293 tcaa 38699290  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 38699306 - 38699254
Alignment:
Q  118 aacacttggaatatcaagaattttactatggcctacccttcacaatattatta 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38699306 aacacttggaatatcaagaattttactatggcctacccttcacaatattatta 38699254  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 43254452 - 43254542
Alignment:
Q  192 taaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaagagc 282  Q
    |||||||||||||||||||||||||   |||||   |||||| ||||||| |||||| ||||| ||||||| |||||||||||||||||||    
T  43254452 taaacaatagcttaacatttcataaaatagagagagttacaagcagctagagttaactttgaaagggtattccccaacaattttgaagagc 43254542  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 22668643 - 22668695
Alignment:
Q  188 acggtaaacaatagcttaacatttcataaggcagagaatattacaaacagcta 240  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  22668643 acggtaaacaatagattaacatttcataaaacagagaatattacaaacagcta 22668695  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 38696648 - 38696593
Alignment:
Q  23 ttttccaagaaaaaagaaaatacatgtatcaaaacaatttcttttcttaatttata 78  Q
    |||||||||||||||||||||| ||| || |||||||||||||||||||| |||||    
T  38696648 ttttccaagaaaaaagaaaatatatgcattaaaacaatttcttttcttaacttata 38696593  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 170
Target Start/End: Complemental strand, 38696287 - 38696250
Alignment:
Q  133 aagaattttactatggcctacccttcacaatattatta 170  Q
    |||||||||| |||||||||||||||||||||||||||    
T  38696287 aagaattttattatggcctacccttcacaatattatta 38696250  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 11896784 - 11896693
Alignment:
Q  191 gtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaagagc 282  Q
    ||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11896784 gtaaacaatagcttaacatttcataaaacatagaatattacaaacagctagtgttaacattgaaggggtatttcccaataattttgaagagc 11896693  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 25001579 - 25001646
Alignment:
Q  190 ggtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggg 257  Q
    |||||||||||||||||||||||||||  | ||||||||||||| ||||||||||| |||||| ||||    
T  25001579 ggtaaacaatagcttaacatttcataaaaccgagaatattacaaccagctagtgttgacattggaggg 25001646  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 24437085 - 24437167
Alignment:
Q  200 agcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaagagc 282  Q
    |||||||||||||||||   |||  |||||||||||| ||||||||||||||||||||| ||| |||| | ||||||||||||    
T  24437085 agcttaacatttcataaaatagaagatattacaaacaactagtgttaacattgaaggggcattccccatccattttgaagagc 24437167  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 22792708 - 22792774
Alignment:
Q  191 gtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggg 257  Q
    |||||||| |||||||||||||||||  || |||||||||||  || |||||||| |||||||||||    
T  22792708 gtaaacaagagcttaacatttcataaaacatagaatattacatccaactagtgttgacattgaaggg 22792774  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 18621671 - 18621581
Alignment:
Q  191 gtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaagag 281  Q
    |||||||| |||||| ||||||||||   ||||||||||||| ||||||| |||||| |||||||||||| |||||||||||||| |||||    
T  18621671 gtaaacaagagcttatcatttcataatatagagaatattacagacagctattgttaatattgaaggggtacttcccaacaattttaaagag 18621581  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 37406603 - 37406655
Alignment:
Q  205 aacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggg 257  Q
    ||||||||||||  ||||||||||||||| |||| ||||||||||||||||||    
T  37406603 aacatttcataaatcagagaatattacaatcagcaagtgttaacattgaaggg 37406655  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 280
Target Start/End: Complemental strand, 49723354 - 49723262
Alignment:
Q  188 acggtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaaga 280  Q
    |||||||||| ||||||| ||||||||||   |||||| ||||||| ||| ||| |||||||||||||||  ||| |||||||||||||||||    
T  49723354 acggtaaacactagcttagcatttcataacatagagaacattacaagcagatagcgttaacattgaagggacattccccaacaattttgaaga 49723262  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 281
Target Start/End: Complemental strand, 27430059 - 27429969
Alignment:
Q  191 gtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaagag 281  Q
    |||||||| |||||||||||||||||  || |||||||||||  |||||||| || |||||||||||  ||| ||||||||  ||||||||    
T  27430059 gtaaacaagagcttaacatttcataaaacatagaatattacatccagctagtattgacattgaagggacattccccaacaaacttgaagag 27429969  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 280
Target Start/End: Complemental strand, 11777817 - 11777728
Alignment:
Q  190 ggtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaaga 280  Q
    ||||||||  ||||||| |||||| ||   ||||||||||| ||| || |||||||||||||||||||| | |||||||||||||||||||    
T  11777817 ggtaaacacaagcttaaaatttcaaaacatagagaatattataaatagttagtgttaacattgaaggggca-ttcccaacaattttgaaga 11777728  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 34221978 - 34222032
Alignment:
Q  227 attacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaagag 281  Q
    |||||||| ||||| ||||||||||||||||| ||| |||||||||||| |||||    
T  34221978 attacaaagagctaatgttaacattgaaggggcattccccaacaattttaaagag 34222032  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 3340583 - 3340539
Alignment:
Q  237 gctagtgttaacattgaaggggtatttcccaacaattttgaagag 281  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||    
T  3340583 gctaatgttaacattgaaggggcatttcccaacaattttaaagag 3340539  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 278
Target Start/End: Original strand, 16531542 - 16531628
Alignment:
Q  192 taaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaattttgaa 278  Q
    ||||||||||||||||||||| | | |  |||||||||||||  |||||||||||| ||| |||||| |||| |||| | |||||||    
T  16531542 taaacaatagcttaacatttcttgaagttgagaatattacaaggagctagtgttaatattaaaggggcattttccaaaacttttgaa 16531628  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 15010375 - 15010288
Alignment:
Q  188 acggtaaacaatagcttaacatttcataaggcagagaatattacaaacagctagtgttaacattgaaggggtatttcccaacaatttt 275  Q
    |||||||||||  ||||||||||||||||   |||||||| ||||||   | |||||||| |||||||||  ||| ||||||||||||    
T  15010375 acggtaaacaaccgcttaacatttcataaaatagagaataatacaaatcaccagtgttaatattgaagggcaattccccaacaatttt 15010288  T

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