View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12109_high_2 (Length: 355)
Name: NF12109_high_2
Description: NF12109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12109_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 3 - 338
Target Start/End: Complemental strand, 41445254 - 41444919
Alignment:
| Q |
3 |
gtgtgttcttatgggaagaaaaaggtggtgtgtaagattgaagattttgcctttgtttgattcaaaaccgtcaaagacaaaaatgtcaagtgtagccttg |
102 |
Q |
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| T |
41445254 |
gtgtgttcttatgggaagaaaaaggtggtgtgtaagattgaagattttgcctttgtttgattcaaaaccgtcaaagacaaaaatgtcaagtgtagccttg |
41445155 |
T |
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| Q |
103 |
cctttattcttttcgcactttctctctccttctcaccatttgctttcggttctaaaataaaatgctttgtctagagctttagatcatttatagatcaata |
202 |
Q |
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| T |
41445154 |
cctttattcttttggtactttctctctccttctcaccatttgctttcggttctaaaataaaatgctttgtctagagctttagatcatttatagatcaata |
41445055 |
T |
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| Q |
203 |
gcttcctcctatggttaagtggaatctgataacataatgcactaggtcataaaagttctttttggtttgttttctcataaattttctcctatcaggtaat |
302 |
Q |
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| T |
41445054 |
gcttcctcctatggttaagtggaatctgataacataatgcactaggtcataaaagttctttttggtttgttttctcatcaattttctcccatcaggtaat |
41444955 |
T |
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| Q |
303 |
cttatttaagaaactatcactaattaaatatgaaat |
338 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
41444954 |
cttatttaagaaactatcactaattaaacatgaaat |
41444919 |
T |
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