View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12109_low_1 (Length: 620)

Name: NF12109_low_1
Description: NF12109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12109_low_1
NF12109_low_1
[»] chr4 (8 HSPs)
chr4 (248-504)||(10426677-10426932)
chr4 (155-250)||(10427623-10427718)
chr4 (535-598)||(10426273-10426336)
chr4 (156-250)||(9199750-9199845)
chr4 (156-217)||(9199512-9199573)
chr4 (199-250)||(9201332-9201384)
chr4 (156-217)||(12094864-12094925)
chr4 (156-217)||(24257703-24257764)
[»] chr7 (5 HSPs)
chr7 (282-483)||(4410741-4410938)
chr7 (156-250)||(20077317-20077412)
chr7 (156-250)||(4407779-4407872)
chr7 (163-244)||(30061499-30061581)
chr7 (252-280)||(4407898-4407926)
[»] chr8 (5 HSPs)
chr8 (155-250)||(26981034-26981130)
chr8 (156-250)||(26083903-26083998)
chr8 (156-245)||(5334273-5334363)
chr8 (156-213)||(42932716-42932773)
chr8 (154-186)||(7496756-7496788)
[»] chr6 (3 HSPs)
chr6 (155-247)||(31442516-31442609)
chr6 (156-242)||(20915980-20916067)
chr6 (156-225)||(7867948-7868018)
[»] chr5 (2 HSPs)
chr5 (156-245)||(6697935-6698025)
chr5 (193-250)||(9045160-9045218)
[»] chr3 (4 HSPs)
chr3 (181-250)||(11582599-11582669)
chr3 (153-209)||(2241513-2241569)
chr3 (154-232)||(39484801-39484881)
chr3 (155-225)||(15291460-15291530)
[»] chr2 (3 HSPs)
chr2 (156-227)||(38996518-38996590)
chr2 (155-227)||(22625385-22625458)
chr2 (156-225)||(28125536-28125606)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 248 - 504
Target Start/End: Complemental strand, 10426932 - 10426677
Alignment:
Q  248 taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10426932 taggttcattgctaccttcttaacatgtgacttgatgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatcct 10426833  T
Q  348 tggtagcttctcctatgtgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattga 447  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10426832 tggtagcttctcctttgcgcggctgaagacttatctgatgcatatttccaaatcctatcaacaccattgtatatttattatttcagcacattggaattga 10426733  T
Q  448 tcaatttgaatgatacacatgcctccaaggtcttatctagaatttacagggcttgct 504  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  10426732 tcaatttgaatgatacacatgcct-caaggtcttatctagaatttacagagcttgct 10426677  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 155 - 250
Target Start/End: Complemental strand, 10427718 - 10427623
Alignment:
Q  155 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccatcatccaagtattaaattctccttag 250  Q
    ||||||| ||| ||||| || |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||    
T  10427718 tatcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaatatttccctccatcatccaagcattaaattcttcttag 10427623  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 535 - 598
Target Start/End: Complemental strand, 10426336 - 10426273
Alignment:
Q  535 ttaattcaacgcttcatcgtagtatctcggttctccacattattctctccttttcttctcacct 598  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  10426336 ttaattcaacgcttcatcgtaatatctccgttctccacattattctctccttttcttctcacct 10426273  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 9199750 - 9199845
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 250  Q
    ||||||||||||||||||| | || ||||||||||||||| || | | ||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttag 9199845  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 9199512 - 9199573
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 217  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattt 9199573  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 199 - 250
Target Start/End: Original strand, 9201332 - 9201384
Alignment:
Q  199 taattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 250  Q
    |||||||||| |||||||| ||| |||||||||||| ||||||||||||||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttag 9201384  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 12094925 - 12094864
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 217  Q
    ||||||||||||||||||| |||| |||||| ||   | |||||||||||||| ||||||||    
T  12094925 atctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattt 12094864  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 24257703 - 24257764
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatattt 217  Q
    ||||||||||||||||||| |||| |||||||||     |||||||||||||| ||||||||    
T  24257703 atctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatattt 24257764  T

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Target: chr7 (Bit Score: 133; Significance: 8e-69; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 282 - 483
Target Start/End: Original strand, 4410741 - 4410938
Alignment:
Q  282 atgcactaatcttatcttaataaatataagctgcatcgtaaatgtaagggaagttgaaaatatccttggtagcttctcctatgtgcggctgaagacttat 381  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||     | |||| ||    
T  4410741 atgcgctaatcttatcttaataaacataagttgcatcgtaaatgtaaggaaagttgaaaatatccttggtagcttctcctttgtgca----atgactgat 4410836  T
Q  382 ctgatgcatatttccaaatcctatcaacaccattgtatatttattaattcagcacattggaattgatcaatttgaatgatacacatgcctccaaggtctt 481  Q
    ||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  4410837 ctgatgcatattttcaaatcctatcagcaccattgtatattaattaattcagcacattggaattgatcaatgtgaatggtacacatgcctccaaggtctt 4410936  T

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Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 156 - 250
Target Start/End: Complemental strand, 20077412 - 20077317
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 250  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||    
T  20077412 atctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttag 20077317  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 4407779 - 4407872
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 250  Q
    ||||||||||||||||| |||  | |||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  ||||||||||||||||    
T  4407779 atctttcttactaaagcgtct--ggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttag 4407872  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 30061499 - 30061581
Alignment:
Q  163 ttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattct 244  Q
    |||||||||||| | ||||||||| || |||||||||||||| | | ||||| |||||||||||  | |||||||| ||||||    
T  30061499 ttactaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagtatttaattct 30061581  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 280
Target Start/End: Original strand, 4407898 - 4407926
Alignment:
Q  252 ttcattgctaccttcttaacatgtgactt 280  Q
    |||||||||||||||||||||||||||||    
T  4407898 ttcattgctaccttcttaacatgtgactt 4407926  T

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Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 155 - 250
Target Start/End: Original strand, 26981034 - 26981130
Alignment:
Q  155 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 250  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||||||||    
T  26981034 tatctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttag 26981130  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 26083903 - 26083998
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 250  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |||||||||| |||||    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttag 26083998  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 5334273 - 5334363
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctc 245  Q
    |||||||||| ||||  || | ||||||| ||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||||||||    
T  5334273 atctttcttattaaaaattatctgatcaaacaatatcataccctaattttaacctaagattttccctccatcatccaagcattaaattctc 5334363  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 42932716 - 42932773
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaat 213  Q
    ||||||||||||||||||| | |||||||||||||||||| |||||||||||| ||||    
T  42932716 atctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 7496756 - 7496788
Alignment:
Q  154 ttatctttcttactaaagcttctttgatcaagc 186  Q
    ||||||||||||||||||||| |||||||||||    
T  7496756 ttatctttcttactaaagcttgtttgatcaagc 7496788  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 31442516 - 31442609
Alignment:
Q  155 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctcct 247  Q
    |||||||||||||||||||| |||| |||||||||  ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||    
T  31442516 tatctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcct 31442609  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 156 - 242
Target Start/End: Complemental strand, 20916067 - 20915980
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaatt 242  Q
    ||||||||||||||||||| | |||||||||||||| ||||| |||||||||| ||||| ||||||||||||||||||| ||||||||    
T  20916067 atctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 7868018 - 7867948
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 225  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccat 7867948  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 156 - 245
Target Start/End: Original strand, 6697935 - 6698025
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctc 245  Q
    ||||||||||||||| ||| | || ||||||||| ||||||| |||||||||| ||||| |||||||||||||| |||| |||||||||||    
T  6697935 atctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctc 6698025  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 250
Target Start/End: Original strand, 9045160 - 9045218
Alignment:
Q  193 ataccctaattttaacttaatattt-ccctccatcatccaagtattaaattctccttag 250  Q
    |||||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||||    
T  9045160 ataccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttag 9045218  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 11582599 - 11582669
Alignment:
Q  181 tcaagcaatatcataccctaattttaacttaata-tttccctccatcatccaagtattaaattctccttag 250  Q
    |||||||||||||||||||||||||||| ||||| ||||||||| ||||||||  |||||||||| |||||    
T  11582599 tcaagcaatatcataccctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttag 11582669  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 2241569 - 2241513
Alignment:
Q  153 cttatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaact 209  Q
    ||||| |||||||||||||||| |||  ||||||||| ||||||| |||||||||||    
T  2241569 cttatttttcttactaaagcttgtttcgtcaagcaatttcataccttaattttaact 2241513  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 154 - 232
Target Start/End: Complemental strand, 39484881 - 39484801
Alignment:
Q  154 ttatctttcttactaaagcttctttgatcaagcaatatcat-accctaattttaacttaata-tttccctccatcatccaa 232  Q
    ||||||||||||||||||||| |||| |||||| ||||  | |||||| ||||||| ||||| ||||||||||||| ||||    
T  39484881 ttatctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaa 39484801  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 15291460 - 15291530
Alignment:
Q  155 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaatatttccctccat 225  Q
    |||||||||||||||||||| |||| |||||| ||    ||||||||| ||||| |||| |||||||||||    
T  15291460 tatctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaatttttccctccat 15291530  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 38996590 - 38996518
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatca 227  Q
    ||||||||||||||||||| | ||||||||| ||||  ||||||||||||||| ||||| |||||||||||||    
T  38996590 atctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatca 38996518  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 22625458 - 22625385
Alignment:
Q  155 tatctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccatca 227  Q
    |||||||||||||||| ||| | || |||||||||   |||||||||||||||| ||||| |||||||||||||    
T  22625458 tatctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 22625385  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 28125536 - 28125606
Alignment:
Q  156 atctttcttactaaagcttctttgatcaagcaatatcataccctaattttaacttaata-tttccctccat 225  Q
    ||||||||||||||||||| | || |||||| || |||||||||||||| | | ||||| |||||||||||    
T  28125536 atctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccat 28125606  T

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