View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12109_low_2 (Length: 433)
Name: NF12109_low_2
Description: NF12109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12109_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 61 - 418
Target Start/End: Complemental strand, 44873820 - 44873462
Alignment:
| Q |
61 |
gtaaagattgaaccttgaccacttgctgaggttcaagtctcttacaaacaaagagcagagttctattcaatttttccataaagtaatttatagtattcct |
160 |
Q |
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| T |
44873820 |
gtaaagattgaaccttgaccacttgttgaggttcaagtctcttacaaacaaagagcagagttctattcaatttttccataaagtaatttatagtattcct |
44873721 |
T |
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| Q |
161 |
ttaattttgtaaacnnnnnnnnnnnnnnnnnnnnn-gtttttattgcatgtcactgtaagaagttttgaccattgttgaataactaatctctctattgaa |
259 |
Q |
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| T |
44873720 |
ttaattttgtaaacaaaaaaaaattgactaaaaaaagtttttattgcatgtcactgtgagaagttttgaccattgttgaataactaatctctctattgaa |
44873621 |
T |
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| Q |
260 |
gatccttagggcaccatcacatcaaatcctcgaagtcgaagtagttagtaatgattgaatattatatttctaattatagtgcataatacttgtaatgtct |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44873620 |
gatccttagggcaccatcacatcaaatcctcgaagtcgaagtagttagtaatgattgaatattatatttctaattacagtgcataatacttgtaatgtct |
44873521 |
T |
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| Q |
360 |
cgatacaagcatgtcaccacaaaaataaagagcttatctactcccccttggttctaatt |
418 |
Q |
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| T |
44873520 |
cgatacaagcatgtcaccacaaaaataaagagcttatctactcccccttggttctaatt |
44873462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 44873877 - 44873842
Alignment:
| Q |
8 |
gaacctgtgtgcattattggtagattctcccttcca |
43 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
44873877 |
gaacctatgtgcattattggtagattctcccttcca |
44873842 |
T |
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