View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12110_high_1 (Length: 699)

Name: NF12110_high_1
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12110_high_1
NF12110_high_1
[»] chr3 (60 HSPs)
chr3 (19-682)||(9594426-9595089)
chr3 (193-614)||(2631011-2631432)
chr3 (193-682)||(2491686-2492157)
chr3 (204-465)||(768316-768574)
chr3 (494-683)||(9562235-9562424)
chr3 (193-682)||(9565805-9566282)
chr3 (193-682)||(7324407-7324875)
chr3 (439-612)||(747354-747527)
chr3 (439-682)||(2476241-2476481)
chr3 (19-150)||(768146-768277)
chr3 (193-322)||(2476580-2476709)
chr3 (480-612)||(754866-754998)
chr3 (485-682)||(2474709-2474904)
chr3 (197-322)||(2635670-2635792)
chr3 (217-403)||(7334239-7334425)
chr3 (495-682)||(7443261-7443448)
chr3 (193-322)||(9561961-9562090)
chr3 (193-317)||(2644338-2644462)
chr3 (419-682)||(7334465-7334728)
chr3 (217-315)||(7442977-7443075)
chr3 (491-612)||(679488-679609)
chr3 (496-612)||(2501828-2501944)
chr3 (193-317)||(2659128-2659252)
chr3 (485-547)||(768609-768671)
chr3 (498-612)||(2644625-2644739)
chr3 (28-89)||(2631518-2631579)
chr3 (28-149)||(2492201-2492322)
chr3 (434-542)||(2659348-2659456)
chr3 (28-88)||(7324260-7324320)
chr3 (217-284)||(754609-754676)
chr3 (193-312)||(7942441-7942560)
chr3 (30-88)||(2476796-2476854)
chr3 (28-94)||(2635877-2635943)
chr3 (19-89)||(9561805-9561875)
chr3 (637-682)||(2635278-2635323)
chr3 (200-316)||(2456201-2456317)
chr3 (635-682)||(2630925-2630972)
chr3 (217-308)||(7430536-7430627)
chr3 (193-267)||(989397-989471)
chr3 (636-682)||(2644757-2644803)
chr3 (644-682)||(2659549-2659587)
chr3 (221-322)||(2502094-2502195)
chr3 (28-88)||(754438-754498)
chr3 (215-267)||(2442040-2442092)
chr3 (642-682)||(2501767-2501807)
chr3 (28-80)||(2502372-2502424)
chr3 (28-88)||(9565658-9565718)
chr3 (252-311)||(747179-747238)
chr3 (200-307)||(771482-771589)
chr3 (28-87)||(7334086-7334145)
chr3 (217-284)||(43991944-43992011)
chr3 (645-679)||(755025-755059)
chr3 (30-88)||(2644187-2644245)
chr3 (568-610)||(13497873-13497915)
chr3 (219-281)||(13498211-13498273)
chr3 (33-89)||(666992-667048)
chr3 (360-404)||(2474970-2475014)
chr3 (215-267)||(2696730-2696782)
chr3 (215-267)||(4142132-4142184)
chr3 (215-267)||(4157942-4157994)
[»] chr2 (5 HSPs)
chr2 (193-312)||(33020269-33020388)
chr2 (193-312)||(33038116-33038235)
chr2 (200-312)||(33026613-33026725)
chr2 (200-267)||(7156175-7156242)
chr2 (193-267)||(7160730-7160804)
[»] scaffold0044 (2 HSPs)
scaffold0044 (193-308)||(89103-89218)
scaffold0044 (570-610)||(88792-88832)
[»] chr6 (5 HSPs)
chr6 (195-244)||(19119087-19119136)
chr6 (195-244)||(19126381-19126430)
chr6 (206-267)||(17368367-17368428)
chr6 (217-276)||(24417486-24417545)
chr6 (641-682)||(9820337-9820378)
[»] chr5 (7 HSPs)
chr5 (219-312)||(20292951-20293044)
chr5 (219-312)||(20301399-20301492)
chr5 (219-312)||(20305812-20305905)
chr5 (219-312)||(20310216-20310309)
chr5 (215-267)||(23766860-23766912)
chr5 (215-267)||(23816708-23816760)
chr5 (216-267)||(11081814-11081865)
[»] scaffold1004 (1 HSPs)
scaffold1004 (220-308)||(2103-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (220-308)||(4598-4686)
[»] chr1 (4 HSPs)
chr1 (645-683)||(51381898-51381936)
chr1 (215-264)||(51381453-51381502)
chr1 (644-683)||(51829309-51829348)
chr1 (645-682)||(51858174-51858211)
[»] chr7 (1 HSPs)
chr7 (568-604)||(27755330-27755366)
[»] chr4 (3 HSPs)
chr4 (193-237)||(20016161-20016205)
chr4 (193-237)||(20019748-20019792)
chr4 (28-88)||(41456255-41456315)


Alignment Details
Target: chr3 (Bit Score: 640; Significance: 0; HSPs: 60)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 19 - 682
Target Start/End: Original strand, 9594426 - 9595089
Alignment:
Q  19 tctgagcacagttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaacttcctatcgtaactttcaaaatcattaaattc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594426 tctgagcacagttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaacttcctatcgtaactttcaaaatcattaaattc 9594525  T
Q  119 catcagcagtcggtcatcctcagaaaaatatagtccaagactccaccaccagcagctgtcttcgaaaccgtgaagatcttgcatgttaggaacatggaac 218  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9594526 catcagcagtcggtcatcctcagacaaatatagtccaagactccaccaccagcagttgtcttcgaaaccgtgaagatcttgcatgttaggaacatggaac 9594625  T
Q  219 aatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctcagcacat 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594626 aatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctcagcacat 9594725  T
Q  319 ccaacctccatgaatatgactcattatcagaatcaggtaggaaaagttgtcgatatgactcatcctctaaagcaagagaaagaataaagtgcaaataatc 418  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594726 ccaacctccatgaatatgactcattatcagaatcagggaggaaaagttgtcgatatgactcatcctctaaagcaagagaaagaataaagtgcaaataatc 9594825  T
Q  419 atctgattcaccttctgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcatgtgggatgtcctctattcttgtccaa 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594826 atctgattcaccttctgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcatgtgggatgtcctctattcttgtccaa 9594925  T
Q  519 taatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaaatgatcatacccgaagcttatgaaaa 618  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9594926 taatcagtccccaaagtataaacaaaaacatcatttttggaagcaaaatcaatgaccttatacttatcaatgaaatgatcatacccgaagcttatgaaaa 9595025  T
Q  619 aagtatcatgtttgcgttgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9595026 aagtatcatgtctgcgtcgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 9595089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 193 - 614
Target Start/End: Complemental strand, 2631432 - 2631011
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    |||| ||||||| |||||||  | ||||||||||||||||||||| |||||| || |  |||||||||||||||||||||||||||||||||||| ||||    
T  2631432 gatcgtgcatgtcaggaacactgcacaatttagtccaagactcttgatttccatattccttcataatccaaacattcaaaaacatatcactagttgcaaa 2631333  T
Q  293 gacacacaagcaatccctcagcacatccaacctccatgaatatgactcattatcagaatcaggtaggaaaagttgtcgatatgactcatcctctaaagca 392  Q
    |||||||||| |||| ||||||||| ||||  |||| |||||||||||||  ||  |||||||| || |||| | | ||||||||||||  |||||| ||    
T  2631332 gacacacaagtaatcactcagcacacccaatgtccaggaatatgactcatcctcgaaatcaggtgggtaaagctcttgatatgactcattttctaaatca 2631233  T
Q  393 agagaaagaataaagtgcaaataatcatctgattcaccttctgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcat 492  Q
    ||||||||||| |||| |||| ||  |||||||||| | | | ||||||||||||||| |||||| ||| ||| |||   || | | ||   | ||| ||    
T  2631232 agagaaagaatgaagtacaaagaactatctgattcatcatgtacataccaattaacagcaccactgacatataatcccgatctacagattgtgcaataat 2631133  T
Q  493 gtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaa 592  Q
     ||||||||| ||||||||| |||||||||||||||| |||||||||| |||||| ||||||| ||||| || | |||||||||||||||||||||||||    
T  2631132 atgggatgtcgtctattcttttccaataatcagtccctaaagtataaagaaaaacttcatttttggaagaaacagcaatgaccttatacttatcaatgaa 2631033  T
Q  593 atgatcatacccgaagcttatg 614  Q
    |  ||||||||| |||||||||    
T  2631032 acaatcatacccaaagcttatg 2631011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 193 - 682
Target Start/End: Complemental strand, 2492157 - 2491686
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    ||||||||||||||||||||    ||||||||||||||||||||  |||||| ||||  |||||||||||||||||||||| | ||||| ||||| ||||    
T  2492157 gatcttgcatgttaggaacactatacaatttagtccaagactctcgatttccatactccttcataatccaaacattcaaaatcctatcaatagttgcaaa 2492058  T
Q  293 gacacacaagcaatccctcagcacatccaacctccatgaatatgactcattatcagaatcaggtaggaaaagttgtcgatatgactcatcctctaaagca 392  Q
     ||||||||||||||||||||||||   ||  || | ||||    |||||| ||| |||||||||||||||||||| |||||||||| | ||||||| ||    
T  2492057 aacacacaagcaatccctcagcacacttaagatcaacgaatcattctcattctcaaaatcaggtaggaaaagttgttgatatgactccttctctaaatca 2491958  T
Q  393 agagaaagaataaagtgcaaataatcatctgattcaccttctgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcat 492  Q
    |||||||||||| | ||     |||||||  ||         ||  ||||||||||||| ||||| || ||||||||   |||||| ||| ||| |  ||    
T  2491957 agagaaagaataca-tg-----aatcatcacat---------gctaaccaattaacagtgccactaacgaatactccgtttccataaatggggtcagaat 2491873  T
Q  493 gtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaa 592  Q
     |||||||||||  ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| || | ||||||||||||| | |||||||||    
T  2491872 atgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaaacaccaatgaccttataatcatcaatgaa 2491773  T
Q  593 atgatcatacccgaagctta--tgaaaaaagtatcatgtttgcgttgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    |||||||||||| |||||||  |||||||     |||||  ||||  | ||||||||||||||||||||||||| |||||||||||||||||    
T  2491772 atgatcatacccaaagcttatttgaaaaa-----catgtccgcgtgaattttccaaaggaggcaataacttaaactttctaatggaagggtt 2491686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 204 - 465
Target Start/End: Original strand, 768316 - 768574
Alignment:
Q  204 ttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||| ||||| ||||||||||    
T  768316 ttaggaacatggaacaatttagtccaagactcttcatttccgtactcattcataatccaaacattaaaaaacatttcactagtgtcaaatacacacaagc 768415  T
Q  304 aatccctcagcacatccaacctccatgaatatgactcattatcagaatcaggtaggaaaagttgtcgatatgactcatcctctaaagcaagagaaagaat 403  Q
    ||||||||| |||| ||||| || |   | |||||||||| | | ||||||||||| |||| | ||||||||| |||| ||||||| |||||||||||||    
T  768416 aatccctcaacacacccaacttcgagcgacatgactcattctaaaaatcaggtaggtaaagctctcgatatgagtcattctctaaatcaagagaaagaat 768515  T
Q  404 aaagtgcaaataatcatctgattcaccttctgcataccaattaacagtaccactcacaaata 465  Q
     |||| ||   ||  |||||||||| | | ||||||||||||||||| ||||||||||||||    
T  768516 gaagtaca---aactatctgattcatcctttgcataccaattaacagcaccactcacaaata 768574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 494 - 683
Target Start/End: Original strand, 9562235 - 9562424
Alignment:
Q  494 tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaaa 593  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||  ||| ||||||| || || || | ||||||||||||| ||||||||||||    
T  9562235 tgggatgtcctctattctcttccaataatcagtccccaaagtataaacactaacttcatttttggtagaaacaacaatgaccttataattatcaatgaaa 9562334  T
Q  594 tgatcatacccgaagcttatgaaaaaagtatcatgtttgcgttgaatttccaaaggaggcaataacttaaattttctaatggaagggttg 683  Q
    ||||||||||||||| ||||| ||| || | |||||| || | |  |||| |||||||||||||||||||||||||||||||||||||||    
T  9562335 tgatcatacccgaagtttatgtaaagaggaacatgttcgcatgggttttcgaaaggaggcaataacttaaattttctaatggaagggttg 9562424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 193 - 682
Target Start/End: Original strand, 9565805 - 9566282
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    ||||||| ||||||||||||  | ||||||||||||||||||||| || ||||||||  |||||||||||||||| || | ||||||||||| || ||||    
T  9565805 gatcttgtatgttaggaacaatgtacaatttagtccaagactcttgatctccgtactccttcataatccaaacatccatatacatatcactacttgcaaa 9565904  T
Q  293 gacacacaagcaatccctcagcacatccaacctccatgaatatgactcattatcagaatcaggtaggaaaagttgtcgatatgactcatcctctaaagca 392  Q
    ||||||||||||| |||||| || | ||||| || |  |||      || | |  |||| |||||| ||||| ||| |||||||||| |   ||||| ||    
T  9565905 gacacacaagcaacccctcaccaaacccaacatcgaccaat------caatcttggaattaggtagcaaaagatgttgatatgactcttttactaaatca 9565998  T
Q  393 agagaaagaataaagtgcaaataatcatctgattcaccttctgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcat 492  Q
    ||||||||||| || ||||  || |    ||| ||| |   |||| ||||||||||||| ||||||||||||  |||      ||  ||| |||||| ||    
T  9565999 agagaaagaatgaaatgca--tact----tgaatcatccattgcaaaccaattaacagtgccactcacaaatgttccagaatgatggatgtggtaattat 9566092  T
Q  493 gtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaa 592  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||  | || || |  ||||| |||||| |||||||||||    
T  9566093 ttgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttcattttttgtagaaacagaaatgagcttataattatcaatgaa 9566192  T
Q  593 atgatcatacccgaagcttatgaaaaaagtatcatgtttgcgttgaattt-ccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    |||||||||||| || ||||||||||| | || |  || ||   |||||| || |||||||||||||||||||||| ||||| ||||||||    
T  9566193 atgatcatacccaaaacttatgaaaaacggatgaccttcgc-aggaatttcccgaaggaggcaataacttaaatttcctaatagaagggtt 9566282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 193 - 682
Target Start/End: Original strand, 7324407 - 7324875
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    ||||||||||||||||||||    ||||||||||||||||||||| ||||||||| |  |||||||||||||||| |||| ||||||||| |||| ||||    
T  7324407 gatcttgcatgttaggaacactatacaatttagtccaagactctttatttccgtagtccttcataatccaaacatccaaagacatatcaccagttccaaa 7324506  T
Q  293 gacacacaagcaatccctcagcacatccaacctccatgaatatgactcattatcagaatcaggtaggaaaagttgtcgatatgactcatcctctaaagca 392  Q
    || ||  | ||||||||||| ||||| |||  ||||| | |      |||| || ||||||||||| ||||| ||| |||||||||| |  | |||| ||    
T  7324507 gagaccaaggcaatccctcaccacatgcaagatccataagt------cattttcggaatcaggtagcaaaagatgttgatatgactccttgtttaaatca 7324600  T
Q  393 agagaaagaataaagtgcaaataatcatctgattcaccttctgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcat 492  Q
    || |||||||||               | ||| ||| |   |||  ||||||||||||| ||| | |||||||||||  ||||| | |||  || |  ||    
T  7324601 agcgaaagaata---------------tttgaatcatcacttgccaaccaattaacagtgccattgacaaatactccctgtccacaaatgttgtcagaat 7324685  T
Q  493 gtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaa 592  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||  ||| | ||||| ||||| || | ||||||||||||| |||||||| ||    
T  7324686 atgggatgtcctctattcttgtccaataatcagtccccaaagtattaacactaactttatttttggaagaaacaacaatgaccttatagttatcaattaa 7324785  T
Q  593 atgatcatacccgaagcttatgaaaaaagtatcatgtttgcgttgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    |||||| ||||| |||||    ||   || | ||||||   || || ||||||| | |||||||||||||||||| ||||||||||||||    
T  7324786 atgatcgtacccaaagctgcaaaagttagcaccatgttcatgtggattttccaaggtaggcaataacttaaatttcctaatggaagggtt 7324875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 439 - 612
Target Start/End: Original strand, 747354 - 747527
Alignment:
Q  439 accaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcatgtgggatgtcctctattcttgtccaataatcagtccccaaagtata 538  Q
    |||||||||||||  |||||||||||| |||   |||| |||||  ||||| |||||||||| ||||||||||| |||||||||||| |||||||||||     
T  747354 accaattaacagtgtcactcacaaatattcccactccacatatgtcgtaataatgtgggatgccctctattcttttccaataatcagcccccaaagtatt 747453  T
Q  539 aacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaaatgatcatacccgaagctta 612  Q
    || |||||| || ||||| |||| || | ||| ||||||||| |||||||||||||||||||| || |||||||    
T  747454 aaaaaaaacctctttttctgaagaaacaacaacgaccttataattatcaatgaaatgatcatatccaaagctta 747527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 439 - 682
Target Start/End: Complemental strand, 2476481 - 2476241
Alignment:
Q  439 accaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcatgtgggatgtcctctattcttgtccaataatcagtccccaaagtata 538  Q
    ||||||||| ||| ||||||||||||||||| |||| | | |||| ||||  || |||||||||||  |||||||||||||||||||||||||||||||     
T  2476481 accaattaagagtgccactcacaaatactccccgtctacaaatgccgtaagaatatgggatgtcctgcattcttgtccaataatcagtccccaaagtatt 2476382  T
Q  539 aacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaaatgatcatacccgaagcttatgaaaaaagtatcatgtttgcgttga 638  Q
    ||||  ||| || |||| |  || || |  ||||||||| || ||||||||  ||||||||||||| |||||||||  |||||||  || || |  | ||    
T  2476381 aacactaacttcgtttttgtcagaaacaagaatgaccttgtagttatcaatagaatgatcatacccaaagcttatg-gaaaagta--atcttcgtatgga 2476285  T
Q  639 atttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
     ||| |||||||||||||| || |||||||||||||||||||||    
T  2476284 tttttcaaaggaggcaatagctgaaattttctaatggaagggtt 2476241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 768146 - 768277
Alignment:
Q  19 tctgagcacagttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaacttcctatcgtaactttcaaaatcattaaattc 118  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || |||||| || |  ||| ||    
T  768146 tctgagcatagttgttttgaaactcaagaatattaaaagtagcagttttggaatcgtaaacaaccaacttcctatcgcaagtttcaacataaaaaaactc 768245  T
Q  119 catcagcagtcggtcatcctcagaaaaatata 150  Q
    || |||||||   ||||||||| ||| |||||    
T  768246 caccagcagtttctcatcctcaaaaatatata 768277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 193 - 322
Target Start/End: Complemental strand, 2476709 - 2476580
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    ||||||||||||||||||||  | ||||||||||||||||||||| |||||| || |  |||||||||||||||| || |||||||||||||| | || |    
T  2476709 gatcttgcatgttaggaacagtgtacaatttagtccaagactctttatttccatagtgtttcataatccaaacatccataaacatatcactagctgcaga 2476610  T
Q  293 gacacacaagcaatccctcagcacatccaa 322  Q
    || |||||||||||||||||  ||||||||    
T  2476609 gatacacaagcaatccctcactacatccaa 2476580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 480 - 612
Target Start/End: Original strand, 754866 - 754998
Alignment:
Q  480 atgcggtaatcatgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttat 579  Q
    |||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||  | || || |  ||||||||| |    
T  754866 atgcggtaattatttgggatatcctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaacagaaatgaccttgt 754965  T
Q  580 acttatcaatgaaatgatcatacccgaagctta 612  Q
    | |||| |||||||||||||||||| |||||||    
T  754966 aattatgaatgaaatgatcatacccaaagctta 754998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 485 - 682
Target Start/End: Complemental strand, 2474904 - 2474709
Alignment:
Q  485 gtaatcatgtgggatgtcctctattcttgtccaataatcagtcc-ccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatactt 583  Q
    |||||||| |||||||||||||||||||||||||||||||||||   ||||||| ||||  ||| ||||||| ||||| |||  ||||| |||| || ||    
T  2474904 gtaatcatatgggatgtcctctattcttgtccaataatcagtccttaaaagtattaacactaacttcatttttggaagaaaatacaatggccttgtaatt 2474805  T
Q  584 atcaatgaaatgatcatacccgaagcttatgaaaaaagtatcatgtttgcgttgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    |||||||||||||||||| || ||||||||    || | | ||| ||   || |  |||||||||||||||||||||||||||||| ||||||||||||    
T  2474804 atcaatgaaatgatcatatccaaagcttatactcaagggaccatttt---gtggtttttccaaaggaggcaataacttaaattttccaatggaagggtt 2474709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 197 - 322
Target Start/End: Complemental strand, 2635792 - 2635670
Alignment:
Q  197 ttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagaca 296  Q
    ||||||||||||||||  | ||||||||||||||||||||||| |||| ||||    |||||||||||||| |||||||| |||||||||| ||||||||    
T  2635792 ttgcatgttaggaacactgtacaatttagtccaagactcttcacttccatactc---cataatccaaacatccaaaaacacatcactagttgcaaagaca 2635696  T
Q  297 cacaagcaatccctcagcacatccaa 322  Q
    |||| ||||| ||||| |||||||||    
T  2635695 cacatgcaattcctcatcacatccaa 2635670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 217 - 403
Target Start/End: Original strand, 7334239 - 7334425
Alignment:
Q  217 acaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctcagcac 316  Q
    ||||||||||||||||||||| ||||||||| |  ||||| |||||||||| | || | ||||||||| |  |||||||||||||||||||||||| ||     
T  7334239 acaatttagtccaagactctttatttccgtagtccttcatgatccaaacatcccaatatatatcactactggcaaagacacacaagcaatccctcaccat 7334338  T
Q  317 atccaacctcca-tgaatatgactcattatcagaatcaggtaggaaaagttgtcgatatgactcatcctctaaagcaagagaaagaat 403  Q
    ||||||  |||| |||| ||   ||||| ||| ||| |||||||||||||||  |||||||||| | ||||||| |||||||||||||    
T  7334339 atccaaaatccactgaacat-tttcattctcataattaggtaggaaaagttgctgatatgactctttctctaaatcaagagaaagaat 7334425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 495 - 682
Target Start/End: Original strand, 7443261 - 7443448
Alignment:
Q  495 gggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaaat 594  Q
    ||||||| |||||||||| ||||||||||||||||||||| || ||||||||| |||| || ||||| || | |||  || ||||| |||||||||||||    
T  7443261 gggatgttctctattcttctccaataatcagtccccaaagcattaacaaaaacctcatatttggaagaaatagcaacaactttataattatcaatgaaat 7443360  T
Q  595 gatcatacccgaagcttatgaaaaaagtatcatgtttgcgttgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    |||||||||| || |||||| |||||| ||||  || | |  || |||   ||||||| ||||||||||| |||| ||||||||||||    
T  7443361 gatcatacccaaaacttatggaaaaaggatcaccttcgagcggatttttataaggaggtaataacttaaactttcgaatggaagggtt 7443448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 193 - 322
Target Start/End: Original strand, 9561961 - 9562090
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    ||||||||||||||||||||  | | ||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||| || ||||||  | ||    
T  9561961 gatcttgcatgttaggaacactgtataatttagtccaagactcttgatttccatactcattcataatccaaacatccaaaaacaaattactagtagctaa 9562060  T
Q  293 gacacacaagcaatccctcagcacatccaa 322  Q
    || ||||||||||| ||| |||||| ||||    
T  9562061 gatacacaagcaattccttagcacacccaa 9562090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 2644338 - 2644462
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    ||||||||| |||||||| |  | ||||||||||||||||||||| |||||| ||||  |||||||||||||||| |||| |   |||||||||| ||||    
T  2644338 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatccaaatattcatcactagttgcaaa 2644437  T
Q  293 gacacacaagcaatccctcagcaca 317  Q
    |||||||||||||||||||| ||||    
T  2644438 gacacacaagcaatccctcaacaca 2644462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 419 - 682
Target Start/End: Original strand, 7334465 - 7334728
Alignment:
Q  419 atctgattcaccttctgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcatgtgggatgtcctctattcttgtccaa 518  Q
    |||||| ||| ||| |||| |||||||||||||  |||||||||||| |||   |||| | ||| || |||||| ||| ||| | ||||||  | |||||    
T  7334465 atctgaatcatcttttgcaaaccaattaacagtgtcactcacaaatattccgaatccaaagatgtggcaatcatatggaatgccatctatttgtttccaa 7334564  T
Q  519 taatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaaatgatcatacccgaagcttatgaaaa 618  Q
    |||||||| |||||||||||||||  ||| |  ||||    || || | ||| ||||||||| |||||||||||||||||||| ||||||||||  || |    
T  7334565 taatcagttcccaaagtataaacactaacttttttttttacagaaacagcaacgaccttataattatcaatgaaatgatcatatccgaagcttaccaaca 7334664  T
Q  619 aagtatcatgtttgcgttgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
     || ||||| || |  | || |||||||||||||||||||||||| |||  |||||||||||||    
T  7334665 taggatcatcttcggctggattttccaaaggaggcaataacttaactttgttaatggaagggtt 7334728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 7442977 - 7443075
Alignment:
Q  217 acaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctcagca 315  Q
    |||| |||||||||||||||| |||||| ||||  ||||| ||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||    
T  7442977 acaacttagtccaagactcttgatttccatactccttcatgatccaaacattaaaaaacaaatcactagcttcatagacacacaagcaatccctcagca 7443075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 491 - 612
Target Start/End: Original strand, 679488 - 679609
Alignment:
Q  491 atgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatg 590  Q
    |||||||||| |||||||||||||||||||||||  ||||||||||| |||| |||| || ||||| |||| || | |||  |||||||  |||||||||    
T  679488 atgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaacaacaaccttatctttatcaatg 679587  T
Q  591 aaatgatcatacccgaagctta 612  Q
    ||||||||||| || |||||||    
T  679588 aaatgatcatatccaaagctta 679609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 496 - 612
Target Start/End: Complemental strand, 2501944 - 2501828
Alignment:
Q  496 ggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaaatg 595  Q
    |||||||||||||  || |||||||||||||||||||||||| |||   ||| |||||||||  || || | ||||||||||||| ||||||||||||||    
T  2501944 ggatgtcctctatctttctccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaacaatgaccttataattatcaatgaaatg 2501845  T
Q  596 atcatacccgaagctta 612  Q
    |||||| || |||||||    
T  2501844 atcatatccaaagctta 2501828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 193 - 317
Target Start/End: Original strand, 2659128 - 2659252
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    ||||||||| |||||||| |  | ||||||||||||||||||||| |||||| ||||  |||||||||||||||| | || |   ||||||| || ||||    
T  2659128 gatcttgcaggttaggaatagtgtacaatttagtccaagactcttgatttccatactccttcataatccaaacatcccaatattcatcactacttgcaaa 2659227  T
Q  293 gacacacaagcaatccctcagcaca 317  Q
    |||||||||||||||||||| ||||    
T  2659228 gacacacaagcaatccctcaccaca 2659252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 485 - 547
Target Start/End: Original strand, 768609 - 768671
Alignment:
Q  485 gtaatcatgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaac 547  Q
    |||||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||||    
T  768609 gtaatcatatgggatgtcctctattcttctccaataatctgttcccaaagtataaacaaaaac 768671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 612
Target Start/End: Original strand, 2644625 - 2644739
Alignment:
Q  498 atgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaacatcattttcggaagcaaaatcaatgaccttatacttatcaatgaaatgat 597  Q
    ||||||| |||||||||||||||||||||||||||||||| |||   ||| |||||||||  || || |  |||||||||||| ||||||| ||| ||||    
T  2644625 atgtcctgtattcttgtccaataatcagtccccaaagtattaaccctaacttcattttcgtcagaaacaataatgaccttataattatcaacgaagtgat 2644724  T
Q  598 catacccgaagctta 612  Q
    |||| || |||||||    
T  2644725 catatccaaagctta 2644739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 2631579 - 2631518
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaacttc 89  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||| ||| ||||||||    
T  2631579 agttgttttgaaactcaagaatattaaaaataccagttttggaatcgtagacaaccaacttc 2631518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 2492322 - 2492201
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaacttcctatcgtaactttcaaaatcattaaattccatcagcag 127  Q
    ||||||||||||||||  ||||||| |||||| |||| |||||||| |||||| |||||||||||  |  ||||| ||||| |  |||  ||| ||||||    
T  2492322 agttgttttgaaactctggaatattcaaagtatcagtcttggaatcataaacaaccaacttcctaatgcgactttgaaaatgaaaaaaccccaccagcag 2492223  T
Q  128 tcggtcatcctcagaaaaatat 149  Q
    | ||||||||||||||| ||||    
T  2492222 ttggtcatcctcagaaatatat 2492201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 434 - 542
Target Start/End: Original strand, 2659348 - 2659456
Alignment:
Q  434 tgcataccaattaacagtaccactcacaaatactcctcgtccatatatgcggtaatcatgtgggatgtcctctattcttgtccaataatcagtccccaaa 533  Q
    |||| ||||||||||||| ||||| ||||||| |||  ||||| | ||| ||| |  || ||| ||||||| ||||||| ||||||||||||||||||||    
T  2659348 tgcaaaccaattaacagtgccactaacaaatagtccatgtccagaaatggggttagaatatggaatgtcctttattcttctccaataatcagtccccaaa 2659447  T
Q  534 gtataaaca 542  Q
    |||| ||||    
T  2659448 gtattaaca 2659456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 7324260 - 7324320
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaactt 88  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||||||| | |||||||    
T  7324260 agttgttttgaaactcaggaatattcaaagtaccagttttggaatcgtaaagaaccaactt 7324320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 754609 - 754676
Alignment:
Q  217 acaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcacta 284  Q
    ||||||||||||||||||||| || ||| ||||  |||||||||||||||| || |||||||||||||    
T  754609 acaatttagtccaagactcttgatctccatactccttcataatccaaacatccataaacatatcacta 754676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 7942560 - 7942441
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    |||||| ||||| |||||||| | |||||||| |||||||||||| ||| || ||||  |||||||||||||||| ||| ||||| | ||||  | ||||    
T  7942560 gatcttccatgtaaggaacattgtacaatttaatccaagactctttattaccatactccttcataatccaaacatccaataacatcttactacgtgcaaa 7942461  T
Q  293 gacacacaagcaatccctca 312  Q
    |  |||||| ||||||||||    
T  7942460 ggtacacaaacaatccctca 7942441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 2476854 - 2476796
Alignment:
Q  30 ttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaactt 88  Q
    ||||||||||||||| |||||||  ||||| |||||||||||||||||||| |||||||    
T  2476854 ttgttttgaaactcaggaatattcgaagtaccagttttggaatcgtaaacaaccaactt 2476796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 2635943 - 2635877
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaacttcctatc 94  Q
    ||||||||||||||||  ||||||| |||||| || ||||||||||||||||| |||||||| ||||    
T  2635943 agttgttttgaaactcgggaatatttaaagtaccatttttggaatcgtaaacaaccaacttcatatc 2635877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 9561805 - 9561875
Alignment:
Q  19 tctgagcacagttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaacttc 89  Q
    ||||| || ||||||||||||||||| ||||||| |||||| |||| || |||||||||||| ||||||||    
T  9561805 tctgatcatagttgttttgaaactcaggaatattcaaagtaccagtcttagaatcgtaaacaaccaacttc 9561875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 637 - 682
Target Start/End: Complemental strand, 2635323 - 2635278
Alignment:
Q  637 gaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||    
T  2635323 gaatttccaaagggggcaataacttacattttctaatggaagggtt 2635278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 316
Target Start/End: Complemental strand, 2456317 - 2456201
Alignment:
Q  200 catgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacac 299  Q
    ||||| ||||| |||| |||||||||||||||| |||| |||||| || |  ||||||| |||||||| | |||||||||||| | || |||| |  |||    
T  2456317 catgtaaggaatatggtacaatttagtccaagagtctttatttccatattccttcataacccaaacatcccaaaacatatcacaatttgcaaaaatgcac 2456218  T
Q  300 aagcaatccctcagcac 316  Q
    ||||||||  |||||||    
T  2456217 aagcaatctttcagcac 2456201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 635 - 682
Target Start/End: Complemental strand, 2630972 - 2630925
Alignment:
Q  635 ttgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    |||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  2630972 ttgattttccaatggaggcaataacttaaactttctaatggaagggtt 2630925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 217 - 308
Target Start/End: Original strand, 7430536 - 7430627
Alignment:
Q  217 acaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatcc 308  Q
    ||||||||||| |||||| || |||||| ||||| |||||||||||||||| |||||||  || || | || ||||||  ||||||||||||    
T  7430536 acaatttagtctaagactttttatttccatacttcttcataatccaaacatccaaaaacccatgacaacttgcaaagatgcacaagcaatcc 7430627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 267
Target Start/End: Complemental strand, 989471 - 989397
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    |||||||||||| || || |  ||||||||||||||||||||||| |||||||||||  ||||| | ||||||||    
T  989471 gatcttgcatgtaagaaatagtgaacaatttagtccaagactctttatttccgtactctttcattacccaaacat 989397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 682
Target Start/End: Original strand, 2644757 - 2644803
Alignment:
Q  636 tgaatttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    ||| ||||||||||||||||||||||||| ||||||| |||||||||    
T  2644757 tgactttccaaaggaggcaataacttaaactttctaacggaagggtt 2644803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 644 - 682
Target Start/End: Original strand, 2659549 - 2659587
Alignment:
Q  644 caaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  2659549 caaaggaggcaataacttaaactttctaatggaagggtt 2659587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 322
Target Start/End: Complemental strand, 2502195 - 2502094
Alignment:
Q  221 tttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctcagcacatcc 320  Q
    |||||||||| |||| | |||||| ||||  |||||||||||||||| | || |   |||||||  | |||||||||||||||||||||| |||||| ||    
T  2502195 tttagtccaaaactccttatttccatactccttcataatccaaacatcccaatattcatcactacctgcaaagacacacaagcaatccctgagcacaccc 2502096  T
Q  321 aa 322  Q
    ||    
T  2502095 aa 2502094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 754438 - 754498
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaactt 88  Q
    ||||||||||||||||| ||||||| | |||| |||| |||||||| |||||| |||||||    
T  754438 agttgttttgaaactcaggaatattcagagtaccagtcttggaatcataaacaaccaactt 754498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 2442092 - 2442040
Alignment:
Q  215 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    |||||||||||||||||| |||| |||||| ||||  ||||||||||||||||    
T  2442092 gaacaatttagtccaagaatctttatttccatactccttcataatccaaacat 2442040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 642 - 682
Target Start/End: Complemental strand, 2501807 - 2501767
Alignment:
Q  642 tccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  2501807 tccaaaggaggcaataacttaaactttgtaatggaagggtt 2501767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 2502424 - 2502372
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaaca 80  Q
    ||||||||||||||||| ||||||| |||||  ||||||||||||| ||||||    
T  2502424 agttgttttgaaactcaggaatattcaaagtgccagttttggaatcataaaca 2502372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 9565658 - 9565718
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaactt 88  Q
    ||||||||||||||||| ||||||| |||||| | || |||||||| |||||| |||||||    
T  9565658 agttgttttgaaactcaggaatattcaaagtaccggtcttggaatcataaacaaccaactt 9565718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 747179 - 747238
Alignment:
Q  252 ttcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctc 311  Q
    ||||||||||||| ||||| |||  |||||||||||  | ||||||||||||||||||||    
T  747179 ttcataatccaaatattcataaatgtatcactagttcgagagacacacaagcaatccctc 747238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 307
Target Start/End: Original strand, 771482 - 771589
Alignment:
Q  200 catgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacac 299  Q
    ||||| |||||| ||| |||||||||||||||| |||  |||||| || |  ||||||| |||||||| | |||||||||||| | || |||| |  |||    
T  771482 catgtaaggaacgtggtacaatttagtccaagagtctgtatttccatattccttcataacccaaacatcccaaaacatatcacaatttgcaaaaatgcac 771581  T
Q  300 aagcaatc 307  Q
    ||||||||    
T  771582 aagcaatc 771589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 7334086 - 7334145
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaact 87  Q
    ||||||||||||||||| | ||||| |||||| ||||||||| ||| |||||| ||||||    
T  7334086 agttgttttgaaactcagggatatttaaagtaccagttttgggatcataaacaaccaact 7334145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 43992011 - 43991944
Alignment:
Q  217 acaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcacta 284  Q
    ||||||| ||||||||||||  |||||| || |  |||||||||||||||| ||||||||||| ||||    
T  43992011 acaatttggtccaagactctatatttccatattccttcataatccaaacatccaaaaacatatgacta 43991944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 645 - 679
Target Start/End: Original strand, 755025 - 755059
Alignment:
Q  645 aaaggaggcaataacttaaattttctaatggaagg 679  Q
    |||||||||||||||||||||||| ||||||||||    
T  755025 aaaggaggcaataacttaaattttgtaatggaagg 755059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 2644187 - 2644245
Alignment:
Q  30 ttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaactt 88  Q
    ||||||||||||||| ||||||| || ||  ||||||||||||| |||||| |||||||    
T  2644187 ttgttttgaaactcaggaatattcaatgtgccagttttggaatcataaacaaccaactt 2644245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 610
Target Start/End: Complemental strand, 13497915 - 13497873
Alignment:
Q  568 caatgaccttatacttatcaatgaaatgatcatacccgaagct 610  Q
    ||||||||||||| |||| |||||||||||||||||| |||||    
T  13497915 caatgaccttataattatgaatgaaatgatcatacccaaagct 13497873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 13498273 - 13498211
Alignment:
Q  219 aatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatca 281  Q
    ||||||||||||||||||| |||||| || |  |||||||||||||||| || ||| ||||||    
T  13498273 aatttagtccaagactctttatttccatattccttcataatccaaacatccacaaagatatca 13498211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 666992 - 667048
Alignment:
Q  33 ttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaacttc 89  Q
    |||||||||||| ||||||| ||||||  ||| |||||||| |||||| ||||||||    
T  666992 ttttgaaactcaggaatattcaaagtactagtcttggaatcataaacaaccaacttc 667048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 2475014 - 2474970
Alignment:
Q  360 aaaagttgtcgatatgactcatcctctaaagcaagagaaagaata 404  Q
    ||||||||| |||||||||| | ||||||| ||||||||||||||    
T  2475014 aaaagttgttgatatgactccttctctaaatcaagagaaagaata 2474970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 2696730 - 2696782
Alignment:
Q  215 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    |||||||||| |||||||||||| |||||| || |  ||||||||||||||||    
T  2696730 gaacaatttaatccaagactctttatttccatattccttcataatccaaacat 2696782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 4142132 - 4142184
Alignment:
Q  215 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    ||||||||||||||||||||||| |||||| || |  ||||||| ||||||||    
T  4142132 gaacaatttagtccaagactctttatttccatattccttcataagccaaacat 4142184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 4157942 - 4157994
Alignment:
Q  215 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    ||||||||||||||||||||||| |||||| || |  ||||||| ||||||||    
T  4157942 gaacaatttagtccaagactctttatttccatattccttcataagccaaacat 4157994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 33020388 - 33020269
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    |||||| ||||| ||||||| || ||||| |||||||||||| || |||||| || |  ||||||||||| ||||| ||||||||||||||| || ||||    
T  33020388 gatcttccatgtaaggaacacggtacaatctagtccaagactttttatttccatattccttcataatccacacattaaaaaacatatcactatttgcaaa 33020289  T
Q  293 gacacacaagcaatccctca 312  Q
    ||  ||||||||||||||||    
T  33020288 gaagcacaagcaatccctca 33020269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 193 - 312
Target Start/End: Complemental strand, 33038235 - 33038116
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    |||||| ||||| ||||||| || ||||| |||||||||||| ||  ||||| || |  ||||||||||||||||  ||||||||||||||| || ||||    
T  33038235 gatcttccatgtaaggaacacggtacaatctagtccaagactttttgtttccatattccttcataatccaaacatcaaaaaacatatcactacttgcaaa 33038136  T
Q  293 gacacacaagcaatccctca 312  Q
    ||  ||||||||||||||||    
T  33038135 gatgcacaagcaatccctca 33038116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 33026725 - 33026613
Alignment:
Q  200 catgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacac 299  Q
    ||||| ||||||| || ||||| |||||||||||| || |||||| || |  ||||||| |||||||| ||||||||||||| |  || ||||||  |||    
T  33026725 catgtgaggaacacggtacaatctagtccaagactttttatttccatattgcttcataacccaaacatccaaaaacatatcatttcttacaaagatgcac 33026626  T
Q  300 aagcaatccctca 312  Q
    |||||||||||||    
T  33026625 aagcaatccctca 33026613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 7156175 - 7156242
Alignment:
Q  200 catgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    ||||| ||||||| |||||||||||| |||||| ||||||||||| ||||  ||||||| ||||||||    
T  7156175 catgtaaggaacacggaacaatttagcccaagaatcttcatttccatactccttcataagccaaacat 7156242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 193 - 267
Target Start/End: Original strand, 7160730 - 7160804
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    |||||| ||||| ||||| | ||||||||||||||||||| || | |||||| ||||  ||||||| ||||||||    
T  7160730 gatctttcatgtgaggaagacggaacaatttagtccaagaatcattatttccatactccttcataagccaaacat 7160804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 308
Target Start/End: Complemental strand, 89218 - 89103
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaa 292  Q
    |||||| ||||| |||||||| | ||||||||||||||||||||| |||||| || |  ||||||| ||||| ||  ||||| ||||||||| ||  |||    
T  89218 gatcttccatgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaatatatcactacttgtaaa 89119  T
Q  293 gacacacaagcaatcc 308  Q
    ||  ||||||||||||    
T  89118 gatgcacaagcaatcc 89103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 570 - 610
Target Start/End: Complemental strand, 88832 - 88792
Alignment:
Q  570 atgaccttatacttatcaatgaaatgatcatacccgaagct 610  Q
    |||| |||||| |||||||||||||||||||| ||||||||    
T  88832 atgatcttataattatcaatgaaatgatcataaccgaagct 88792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 19119136 - 19119087
Alignment:
Q  195 tcttgcatgttaggaacatggaacaatttagtccaagactcttcatttcc 244  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  19119136 tcttccatgtaaggaacatgaaacaatttagtccaagactcttcatttcc 19119087  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 19126430 - 19126381
Alignment:
Q  195 tcttgcatgttaggaacatggaacaatttagtccaagactcttcatttcc 244  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  19126430 tcttccatgtaaggaacatgaaacaatttagtccaagactcttcatttcc 19126381  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 17368428 - 17368367
Alignment:
Q  206 aggaacatggaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    ||||||||| |||||||||||||||||| |||||||||| ||||  ||||| | ||||||||    
T  17368428 aggaacatgaaacaatttagtccaagacccttcatttccatactctttcatcagccaaacat 17368367  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 276
Target Start/End: Original strand, 24417486 - 24417545
Alignment:
Q  217 acaatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaaca 276  Q
    |||||||||||||||| |||| |||||| || |  ||||||||||||||||| |||||||    
T  24417486 acaatttagtccaagattctttatttccatattctttcataatccaaacatttaaaaaca 24417545  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 641 - 682
Target Start/End: Original strand, 9820337 - 9820378
Alignment:
Q  641 ttccaaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    |||||||||||||||||  ||| |||||||||||||||||||    
T  9820337 ttccaaaggaggcaatatgttatattttctaatggaagggtt 9820378  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 20293044 - 20292951
Alignment:
Q  219 aatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctca 312  Q
    ||||||||||||||||||| | |||| || |  |||||||||||||||| ||||  || |||||||||| || |||  ||||||||||||||||    
T  20293044 aatttagtccaagactctttaattccatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20292951  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 20301492 - 20301399
Alignment:
Q  219 aatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctca 312  Q
    ||||||||||||||||||| | || | || |  |||||||||||||||| ||||  || |||||||||| || |||  ||||||||||||||||    
T  20301492 aatttagtccaagactctttaattgcatattccttcataatccaaacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20301399  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 20305905 - 20305812
Alignment:
Q  219 aatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctca 312  Q
    ||||||||||||||||||| | |||| || |  ||||||||||| |||| ||||  || |||||||||| || |||  ||||||||||||||||    
T  20305905 aatttagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20305812  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 312
Target Start/End: Complemental strand, 20310309 - 20310216
Alignment:
Q  219 aatttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatccctca 312  Q
    ||||||||||||||||||| | |||| || |  ||||||||||| |||| ||||  || |||||||||| || |||  ||||||||||||||||    
T  20310309 aatttagtccaagactctttaattccatattccttcataatccagacatccaaatccagatcactagttacatagatgcacaagcaatccctca 20310216  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 23766860 - 23766912
Alignment:
Q  215 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    ||||||||||||||||||||||| |||||| || |  ||||||||||||||||    
T  23766860 gaacaatttagtccaagactctttatttccatattctttcataatccaaacat 23766912  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 23816708 - 23816760
Alignment:
Q  215 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    ||||||||||||||||||||||| |||||| || |  ||||||||||||||||    
T  23816708 gaacaatttagtccaagactctttatttccatattctttcataatccaaacat 23816760  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 11081865 - 11081814
Alignment:
Q  216 aacaatttagtccaagactcttcatttccgtacttattcataatccaaacat 267  Q
    |||||||||||||||||||||| |||||| ||||  ||||||| ||||||||    
T  11081865 aacaatttagtccaagactctttatttccatactccttcataacccaaacat 11081814  T

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Target: scaffold1004 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 2191 - 2103
Alignment:
Q  220 atttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatcc 308  Q
    ||||||||||||||||| ||||||| || |  ||||||  ||||||||||||||||| |||| || || ||||||  ||||||||||||    
T  2191 atttagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcc 2103  T

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Target: scaffold0760 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 4686 - 4598
Alignment:
Q  220 atttagtccaagactcttcatttccgtacttattcataatccaaacattcaaaaacatatcactagtttcaaagacacacaagcaatcc 308  Q
    ||||||||||||||||| ||||||| || |  ||||||  ||||||||||||||||| |||| || || ||||||  ||||||||||||    
T  4686 atttagtccaagactctacatttccatattccttcatagcccaaacattcaaaaacacatcattacttgcaaagatgcacaagcaatcc 4598  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 645 - 683
Target Start/End: Original strand, 51381898 - 51381936
Alignment:
Q  645 aaaggaggcaataacttaaattttctaatggaagggttg 683  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  51381898 aaaggaggcaatatcttaaattttctaatggaagggttg 51381936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 264
Target Start/End: Original strand, 51381453 - 51381502
Alignment:
Q  215 gaacaatttagtccaagactcttcatttccgtacttattcataatccaaa 264  Q
    |||||||||||||||||||||||||||||| || |  |||||||||||||    
T  51381453 gaacaatttagtccaagactcttcatttccatattctttcataatccaaa 51381502  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 644 - 683
Target Start/End: Complemental strand, 51829348 - 51829309
Alignment:
Q  644 caaaggaggcaataacttaaattttctaatggaagggttg 683  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  51829348 caaaggaggcaatatcttaaattttctgatggaagggttg 51829309  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 645 - 682
Target Start/End: Complemental strand, 51858211 - 51858174
Alignment:
Q  645 aaaggaggcaataacttaaattttctaatggaagggtt 682  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  51858211 aaaggaggcaatatcttgaattttctaatggaagggtt 51858174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 568 - 604
Target Start/End: Complemental strand, 27755366 - 27755330
Alignment:
Q  568 caatgaccttatacttatcaatgaaatgatcataccc 604  Q
    ||||||||||||| | |||||||||||||||||||||    
T  27755366 caatgaccttataatcatcaatgaaatgatcataccc 27755330  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 20016161 - 20016205
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactctt 237  Q
    ||||||||||||||| || |  |||||||||||||||||||||||    
T  20016161 gatcttgcatgttagaaagagtgaacaatttagtccaagactctt 20016205  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 20019748 - 20019792
Alignment:
Q  193 gatcttgcatgttaggaacatggaacaatttagtccaagactctt 237  Q
    ||||||||||||||| || |  |||||||||||||||||||||||    
T  20019748 gatcttgcatgttagaaagagtgaacaatttagtccaagactctt 20019792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 41456315 - 41456255
Alignment:
Q  28 agttgttttgaaactcaagaatattaaaagtaacagttttggaatcgtaaacagccaactt 88  Q
    ||||||||||||||||| ||||||| |||||| || | ||| |||| |||||| |||||||    
T  41456315 agttgttttgaaactcaggaatattcaaagtaccaatcttgaaatcataaacaaccaactt 41456255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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