View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12110_high_11 (Length: 375)
Name: NF12110_high_11
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 3554198 - 3554535
Alignment:
| Q |
19 |
cgccgctcactaaataaaccaacggtagttaaatgccgttgtgttctagtttattccataatagcaacatcggctaactcatttattcaaaaactgaaat |
118 |
Q |
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| T |
3554198 |
cgccgctcactaaataaaccaacggtagttaaatgctgttgtgttct-------tccataatagcaacattagctaactcatttattcaaaaactgaaat |
3554290 |
T |
|
| Q |
119 |
agaaacatttctcgctccatactcccacaaaccaatttcttcaacttcaagtaaatcatcaattaaattacataaaccttaacttcctagagttccttgt |
218 |
Q |
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| T |
3554291 |
agaaacatttctcgctccatactcccacaaaccaatttcttcaacttcaagtaaatcatcaattaaattacataaaccttaacttcctagagttccttgt |
3554390 |
T |
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| Q |
219 |
atttaggtcattattaaggatttttattttgtcttcacacacataacacgttatgctccaaatgatttttctcttgatagaatttacactaattgcagca |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3554391 |
atttaggtcattattaaggatttttattttgtcttcacacatataacacattatgctccaaatgatttctctcttgatagaatttacactaattgcagca |
3554490 |
T |
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| Q |
319 |
atttgcgagtgatccagatgtgtagttttgttctaagagcacagg |
363 |
Q |
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| T |
3554491 |
atttgcgagtgatccagatgtgtagttttgttctaagagcacagg |
3554535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 3126951 - 3126855
Alignment:
| Q |
200 |
acttcctagagttccttgtatttaggtcattattaaggatttttattttgtcttcacacacataacacgttatgctccaaatgatttttctcttgatag |
298 |
Q |
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| T |
3126951 |
acttcctagagttccttgtatttaggtcatcattaaggattttta--ttgtcttcacacatataacacattatgctccaaatgattcctcttttgatag |
3126855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Complemental strand, 31245858 - 31245804
Alignment:
| Q |
122 |
aacatttctcgctccatactcccacaaaccaatttcttcaacttcaagtaaatca |
176 |
Q |
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|||||||||| || ||||||||| |||| |||||| |||||||||||| |||||| |
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| T |
31245858 |
aacatttctcacttcatactcccgcaaatcaattttttcaacttcaagcaaatca |
31245804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 6532556 - 6532510
Alignment:
| Q |
122 |
aacatttctcgctccatactcccacaaaccaatttcttcaacttcaa |
168 |
Q |
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| T |
6532556 |
aacatttctctctccatactcccacaaaccaatttcttcagcttcaa |
6532510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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