View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12110_high_20 (Length: 227)
Name: NF12110_high_20
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 6322615 - 6322394
Alignment:
| Q |
2 |
catgacagttcataattataaacggaaatgaaatgacacttaataatactccctccggatacatatataagcaaaata-ttannnnnnnnagattaattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
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| T |
6322615 |
catgacagttcataattataaacggaaatgaaatgacacttaataatactccctccggatacatatataagcaaaagattttttttttttagattaattg |
6322516 |
T |
|
| Q |
101 |
aataactgatgtatctaaccaaatatatcggttgtttaatgcatctaaagnnnnnnntaattgtttatatatgagaccggaaagagtatattgctaacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6322515 |
aataactgatgtatctaaccaaatatatcggttgtttaatgcatctaaag-aaaaaataattgtttatatatgagaccggaaagagtatattgctaaccc |
6322417 |
T |
|
| Q |
201 |
tgagtagtttcagctgagtggtg |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6322416 |
tgagtagtttcagctgagtggtg |
6322394 |
T |
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