View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12110_high_3 (Length: 507)
Name: NF12110_high_3
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 7222360 - 7222841
Alignment:
| Q |
18 |
atcatcaactgggtcccctacctctacatataatctatttctttgggaacttgttttcagaaaataatctgtaccccatctaatggcattttgaatattt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7222360 |
atcatcaactgggtcccctacctctacatataatctatttctttgggaactagttttcagaaaataatcagtaccccatctaatggcattttgaatattt |
7222459 |
T |
|
| Q |
118 |
cccatttcatttgttgcttcaaattctgttttataaaatattgctgcccatgataatgtagtaactgtgaatgccattggtagcccatatttcacattgt |
217 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7222460 |
cccatttcattagttgcttcaaattctgttttataaaatattgctgcccatgataatgtagtaactgtgaatgccattggtagcccatatttcacattgt |
7222559 |
T |
|
| Q |
218 |
ccccggcatcataatatcctcctgataggtcaacctattcatttcaataaaatcaaacacatatgcccaaattattcattttgtacgtnnnnnnnntatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
7222560 |
ccccggcatcataatatcctcctgataggtcaacctattcaattcaataaaatcaaacacatatgctcaaattattcattttgtacgtaaaaaaaatctg |
7222659 |
T |
|
| Q |
318 |
tgtaactttgataattaatattcatcagtnnnnnnnntctgttgttatttcaagttttcctaataatgattttgttttgagaaaaagaaacatacattag |
417 |
Q |
| |
|
|||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7222660 |
tgtaactttgataattaatattcaccattaaaaaaaatctgttgttatttcaagttttcctaataatgattttgttttgagaaaaagaaacatacattat |
7222759 |
T |
|
| Q |
418 |
cgagttttccatcatccactgccgagtctcctctccaagggaccctattactgggagggagtttccctgatctctgctcctc |
499 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
7222760 |
cgagttttccatcatccactgctgagtctcctctccaagggaccctattactgggagggagtttccctgatctttgcgcctc |
7222841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 26 - 298
Target Start/End: Original strand, 48526983 - 48527257
Alignment:
| Q |
26 |
ctgggtcccctacctctacatataatctatttctttgggaacttgttttcagaaaataatctgtaccccatctaatggcattttgaatatttcccatttc |
125 |
Q |
| |
|
|||||||||||||||| ||||||||| | |||||| ||||| | ||| | |||||||||||| |||||| | || |||| |||||||||||||||||| |
|
|
| T |
48526983 |
ctgggtcccctacctcaacatataatttgtttcttctagaactagcttttaaaaaataatctgttccccatttgattgcatcttgaatatttcccatttc |
48527082 |
T |
|
| Q |
126 |
atttgttgcttcaaattctgttttataaaatattgctgcccatgataatgtagtaactgtgaatgccattggtagcccatatttcacattgtccccggca |
225 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| || || ||| |
|
|
| T |
48527083 |
ctttgttgcttcaaattctgttttgtaaaatattgcagcccatgataatgtagtcacagtgaatgccattggtagcccatatttcacattatctcctgca |
48527182 |
T |
|
| Q |
226 |
tcataatatcctcctgataggtcaacct--attcatttcaataaaatcaaacacatatgcccaaattattcattt |
298 |
Q |
| |
|
||||||||||| || |||||||| |||| ||||| ||||||||||| | ||||| |||||||||||||||| |
|
|
| T |
48527183 |
tcataatatcccccagataggtccacctacattcaattcaataaaattatgcacattaacccaaattattcattt |
48527257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 48527427 - 48527522
Alignment:
| Q |
395 |
tgagaaaaagaaacatacattagcgagttttccatcatccactgccgagtctcctctccaagggaccctattactgggagggagtttccctgatct |
490 |
Q |
| |
|
||||||||| ||| |||||||||||||||| || || || || || ||||||||||||||||| ||||| ||| | ||||||||||| |||||||| |
|
|
| T |
48527427 |
tgagaaaaataaagatacattagcgagtttgccgtcgtcgacagctgagtctcctctccaaggaaccctgttatttggagggagttttcctgatct |
48527522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 50304205 - 50304087
Alignment:
| Q |
43 |
acatataatctatttctttgggaacttgttttcagaaaataatctgtaccccatctaatggcattttgaatatttcccatttcatttgttgcttcaaatt |
142 |
Q |
| |
|
|||||||||||||||||| ||| || |||||||||||||||| |||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
50304205 |
acatataatctatttcttccggagctagttttcagaaaataatatgtaccccatttaataacattttgaatatttcctatttcatttgttgcttcaaatt |
50304106 |
T |
|
| Q |
143 |
ctgttttataaaatattgc |
161 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
50304105 |
cagttttgtaaaatattgc |
50304087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 157 - 244
Target Start/End: Complemental strand, 50303873 - 50303786
Alignment:
| Q |
157 |
attgctgcccatgataatgtagtaactgtgaatgccattggtagcccatatttcacattgtccccggcatcataatatcctcctgata |
244 |
Q |
| |
|
||||| |||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
50303873 |
attgcagcccataataatgtagtaattgtgaatgccattggtaacctatatttcacattgtccccaacatcgtaatatcctccagata |
50303786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 40869188 - 40869243
Alignment:
| Q |
184 |
gtgaatgccattggtagcccatatttcacattgtccccggcatcataatatcctcc |
239 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| |||||||| || ||||| |
|
|
| T |
40869188 |
gtgaatgccatcggtagcccaaatttcacgttgtcccctgcatcatagtagcctcc |
40869243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 41915368 - 41915316
Alignment:
| Q |
178 |
gtaactgtgaatgccattggtagcccatatttcacattgtccccggcatcata |
230 |
Q |
| |
|
||||| || ||||||||||||| |||| |||||||||| ||||| |||||||| |
|
|
| T |
41915368 |
gtaacagtaaatgccattggtaacccaaatttcacattatcccctgcatcata |
41915316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University