View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12110_high_4 (Length: 448)
Name: NF12110_high_4
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 23 - 436
Target Start/End: Complemental strand, 2131679 - 2131266
Alignment:
| Q |
23 |
atgttatcattcacttcaacttttccgttttgattatttcatgtgcatcagtgctcttcgtcatcccgtttgtaccctgttagaaattttgcttgtacaa |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131679 |
atgttatcattcacttcaacttttccgttttgattatttcatgtgcatcagtgctcttcgtcatcccgtttgtaccctgttagaaattttgcttgtacaa |
2131580 |
T |
|
| Q |
123 |
actgtctgtcctcattggatggttctgttgggtgcatgcatttatttaccatttttaaggtatatttttgatttcttcactatggatcttactggatagt |
222 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2131579 |
actgtctgtcctcattggatggttctgttggttgcatgcatttatttaccatttttaaggtatattttttatttcttcactatggatcttactggatagt |
2131480 |
T |
|
| Q |
223 |
tcttaccttattctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactagaagaagctgacataggtat |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131479 |
tcttaccttattctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactagaagaagctgacataggtat |
2131380 |
T |
|
| Q |
323 |
tattccaaatatatcattatcttaccttctaaaacttactcgtgttattggaaaattttgaggcagtggtatcttatgtctttaatattcatgctctgtg |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2131379 |
tattccaaatatatcattatcttaccttctaaaacttactcatgttattggaaaattttgaggcagtggtatcttatgtctttaatattcatgctctgta |
2131280 |
T |
|
| Q |
423 |
tgtctgcacaggtt |
436 |
Q |
| |
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|||||| ||||||| |
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| T |
2131279 |
tgtctgtacaggtt |
2131266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 105 - 393
Target Start/End: Complemental strand, 2127035 - 2126740
Alignment:
| Q |
105 |
gaaattttgcttgtacaaactgtctgtcctcattggatggttctgtt-gggtgcatgcatttatttaccatttttaaggtatatttttgatttcttcact |
203 |
Q |
| |
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||||||||||||| ||| ||| ||||||| || |||| |||||||| |||||| || |||||||| ||||| | ||| | || ||||||||||| || |
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| T |
2127035 |
gaaattttgcttgaacatactacctgtccttatcggattgttctgttagggtgcctgtatttattttccattctaaagatctacctttgatttctttacc |
2126936 |
T |
|
| Q |
204 |
atggatcttactggatagttcttaccttattctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactag |
303 |
Q |
| |
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|| ||||||| ||||| |||| |||||||||| |||||||||||| ||||||||||||||||||||| ||||| || ||||||||||||| |||||||| |
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| T |
2126935 |
attgatcttattggatgattctcaccttattcttaggttcgggatttcattcatgttgttgatttagcagatgggcacattgctgcattgcttaaactag |
2126836 |
T |
|
| Q |
304 |
aagaagctgacataggtattattccaaatatatcattatcttaccttctaaaactta------ctcgtgttattggaaaattttgaggcagtggta |
393 |
Q |
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| |||||||| |||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
2126835 |
aggaagctgatataggtattattccaaatttatcattatcttatcttctaatacttaacctgtgtcgtgttattggaaaattctgaggcagtggta |
2126740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 41807785 - 41807714
Alignment:
| Q |
233 |
ttctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactaga |
304 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| |
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|
| T |
41807785 |
ttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgtaagctaga |
41807714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 42030860 - 42030931
Alignment:
| Q |
233 |
ttctcaggttcgggattacattcatgttgttgatttagctgatggccatattgctgcattgcgtaaactaga |
304 |
Q |
| |
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||||||||| || |||||||||||||||||||||||||||||||| || |||||||||||| |||| ||||| |
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| T |
42030860 |
ttctcaggtccgtgattacattcatgttgttgatttagctgatgggcacattgctgcattgtgtaagctaga |
42030931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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