View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12110_low_12 (Length: 384)
Name: NF12110_low_12
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 126 - 375
Target Start/End: Complemental strand, 37668997 - 37668738
Alignment:
| Q |
126 |
gaattaacgagtgcataaactttagttgattcatttatctattataaaaaggcctggagtggg--ttttttattttcaaacccgtaaattttaatatcat |
223 |
Q |
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| T |
37668997 |
gaattaacgagtgcataaactttagttgattcatttatctattataaaaaggcctggagtgagttttttttcttttcaaacccgtcaattttaatatcat |
37668898 |
T |
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| Q |
224 |
tgatattttctctctctcacgcacttttacnnnnnnnnnngtgtcattttaatttacaatatagtttttcaattacatatataatacaatttgaatcgct |
323 |
Q |
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| T |
37668897 |
tgatattctctctctctcacgcacctttac--aaaaaaaagtgtcattttaatttacaatatagtttttcaattac----ataatacaatttgaatcgct |
37668804 |
T |
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| Q |
324 |
ttt--------------cgcttagtaaaaggttgcaaaaatattgtatatgcctgagcacaggttc |
375 |
Q |
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| T |
37668803 |
tttaagttattattttccgcttagtgaaaggttgcaaaaatattgtatatgcctaagcacaagttc |
37668738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 37669105 - 37669026
Alignment:
| Q |
19 |
acacccacaaagggcagaactgcctcgactccatccaatat-ttttcttcactcgcctatctattttcgttaattacaat |
97 |
Q |
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| T |
37669105 |
acacccacaaagggcagaactgcctcgactccatccaatattttttcttcactcgcctatctgttttcgttaattacaat |
37669026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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