View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12110_low_13 (Length: 382)
Name: NF12110_low_13
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 37272348 - 37271992
Alignment:
| Q |
19 |
tatttaacttaacattgattgttattatcttttaggtttgacaaaagagtgagatatgcctctcgcaaggaaagggctgatgtccgaaggcgcgtgaagg |
118 |
Q |
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| T |
37272348 |
tatttaacttaacattgattgttattatcttttaggtttgacaaaagagtgagatatgcctctcgcaaggaaagggctgatgtccgaaggcgcgtgaagg |
37272249 |
T |
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| Q |
119 |
gccggtttgttaaagccggcgaggcctatgattatgaccctttgagccaaaccagaagctactgagtgtataatttttaaccatttcttaaaaggaaaga |
218 |
Q |
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| T |
37272248 |
gccggtttgttaaagccggcgaggcctatgattatgaccctttgagccaaaccagaagctactgagtgtataatttttaaccatttcttaaaaggaaaga |
37272149 |
T |
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| Q |
219 |
cacaattatacctgaaaaatgggtgatatttgatgcattctttttccgtgcaatgacgaactgtcttgattttatctcagggttctacctttcttcaagg |
318 |
Q |
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| T |
37272148 |
cacaattatgcctgaaaaatgggtgatatttgatgcattctttttccgtgcaatgacgaactgtcttgattttatctcagggttctacctttcttcaagg |
37272049 |
T |
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| Q |
319 |
acaaaaaagggtctaagaagactgttcaacagtataaactctgaatccgattctctg |
375 |
Q |
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| T |
37272048 |
acaaaaaagggtctaagaagactgttcaacagtataaactccgaatccgattctctg |
37271992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 29461819 - 29461973
Alignment:
| Q |
48 |
ttttaggtttgacaaaagagtgagatatgcctctcgcaaggaaagggctgatgtccgaaggcgcgtgaagggccggtttgttaaagccggcgaggcctat |
147 |
Q |
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|||||||||||| || | ||| |||||||| ||||| |||| ||||||||||||| ||| || ||||| |||||||| || ||||| || || | || |
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| T |
29461819 |
ttttaggtttgataagaaagtaagatatgcttctcggaaggcaagggctgatgtcagaaaacgtgtgaaaggccggttcgtcaaagctggggaaacatac |
29461918 |
T |
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| Q |
148 |
gattatgaccctttgagccaaaccagaagctactgagtgtataatttttaaccat |
202 |
Q |
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|| |||||||||||||| ||||| ||||||| ||||||| | | ||||||||||| |
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| T |
29461919 |
gactatgaccctttgagtcaaactagaagctgctgagtgcacactttttaaccat |
29461973 |
T |
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