View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12110_low_15 (Length: 363)
Name: NF12110_low_15
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_low_15 |
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| [»] scaffold0161 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 32471708 - 32472041
Alignment:
| Q |
18 |
caaaactcatcctccctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32471708 |
caaaactcatcctccctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccac |
32471807 |
T |
|
| Q |
118 |
taataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctacatcaccagtgtaaaaccaacccttcttaaaacaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32471808 |
taataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcatcacacctacatcaccagtgtaaaaccaacccttcttaaaacaatt |
32471907 |
T |
|
| Q |
218 |
ctttgttccttcactatctttcaaataccctaacataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttacactttcacca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32471908 |
ttttgttccttcactatctttcaaataccctaacataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttacactttcacca |
32472007 |
T |
|
| Q |
318 |
cttggacccaccacatcaacctttgtcatcccta |
351 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |
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| T |
32472008 |
cttggacccactacatcaacctttgtcatcccta |
32472041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 32465163 - 32464979
Alignment:
| Q |
18 |
caaaactcatcctccctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccac |
117 |
Q |
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|||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||||| | |||||||||||||||||||| |||||| ||||||| |
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| T |
32465163 |
caaaactcatccggcctcgccaccaccgccgcctccttaaccgccggatgcatatacaaaacagcctcaacctccacactactcatattctctccaccac |
32465064 |
T |
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| Q |
118 |
taataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctacatcaccagtgtaaaaccaacc |
202 |
Q |
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| T |
32465063 |
ttattatcacatcttttgtcctatccttaatctccatatacccattcttatgtataaccccaacatcacccgtgtaaaaccaacc |
32464979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 32455987 - 32456162
Alignment:
| Q |
33 |
ctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccactaataatcacatctt |
132 |
Q |
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|||||||||||||||||||| || ||||||| ||| |||||||||| |||||||||||||||||||| |||||| || ||||| || |||| ||||| |
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| T |
32455987 |
ctcgccaccaccgccgcctccttaaccgccgaatgcatatacaaaaccccctcaacctccacactactcatattctctccgccacttattatcaaatctt |
32456086 |
T |
|
| Q |
133 |
ttgacctatcttttatctctaaatacccatcttcatgcattacacctacatcaccagtgtaaaaccaacccttctt |
208 |
Q |
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||||||||||||| ||||| ||||||||||| |||||||| || | |||||||| || ||||||||||| ||||| |
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| T |
32456087 |
ttgacctatctttaatctccaaatacccatcctcatgcataaccgcaacatcacccgtataaaaccaaccattctt |
32456162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 339
Target Start/End: Complemental strand, 32464945 - 32464839
Alignment:
| Q |
233 |
atctttcaaataccctaacataacacaaccacctctcataacaacttcaccaagcgttgcaccatcacgttttacactttcaccacttggacccaccaca |
332 |
Q |
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|||||| ||||| || | |||||||||| ||||| | | ||| | |||||||| |||| |||||||| ||||||||||||||| | || || |||||| |
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| T |
32464945 |
atcttttaaataaccaagcataacacaagcaccttttacaacgatttcaccaaccgttacaccatcattctttacactttcaccagtgggtccgaccaca |
32464846 |
T |
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| Q |
333 |
tcaacct |
339 |
Q |
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||||||| |
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| T |
32464845 |
tcaacct |
32464839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 208
Target Start/End: Complemental strand, 24593 - 24403
Alignment:
| Q |
18 |
caaaactcatcctccctcgccaccaccgccgcctcattcaccgccggatgtccatacaaaaccgactcaacctccacactactcaaattctcaccaccac |
117 |
Q |
| |
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||||| |||||| ||| ||||||||||||||||| || ||||| ||||| |||||||| |||||| ||||||||||||| |||||| ||||||| |
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| T |
24593 |
caaaaatcatccggcctagccaccaccgccgcctccttaaccgcgggatgcatgtacaaaacaccctcaacttccacactactcatattctccccaccac |
24494 |
T |
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| Q |
118 |
taataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctacatcaccagtgtaaaaccaacccttctt |
208 |
Q |
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| || |||||||||||| ||||||| || ||||| ||||||||||| |||||||| || | |||||||| || ||||||||||| ||||| |
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| T |
24493 |
ttattatcacatcttttaacctatccttaatctccaaatacccatcctcatgcataaccgcaacatcacctgtataaaaccaaccattctt |
24403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 190
Target Start/End: Original strand, 29003809 - 29003880
Alignment:
| Q |
119 |
aataatcacatcttttgacctatcttttatctctaaatacccatcttcatgcattacacctacatcaccagt |
190 |
Q |
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||||||||||||||| ||||||||||| || || ||||| ||||||| ||| || ||||| ||||||||||| |
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| T |
29003809 |
aataatcacatctttagacctatctttaatttccaaataaccatctttatgtataacaccaacatcaccagt |
29003880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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