View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12110_low_17 (Length: 327)
Name: NF12110_low_17
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 24 - 310
Target Start/End: Complemental strand, 16917941 - 16917655
Alignment:
| Q |
24 |
ttaaatcaaatccaaaatattttgcaatgatttgaatcatatacatgttcatcactcatggctcatcatcaacctccatgtccgattcactgtctgaatc |
123 |
Q |
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| T |
16917941 |
ttaaatcaaatccaaaatattttgcaatgatttgaatcatatacatgttcatcactcatggctcatca---acctccatgtccaattcactgtctgaatc |
16917845 |
T |
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| Q |
124 |
gctatactcttcttctgcacataacaattcaatgtgttagaaaacatcaagaattttatgagaatactggctttaggagaaaaggtaagttatttactaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||| ||||||||||| |
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| T |
16917844 |
gctatactcttcttctgcacataacaattcaatgtgttagaaaacatcaggaattttatgagaatactggctttagtaaaaaacgtaacttatttactaa |
16917745 |
T |
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| Q |
224 |
attacagaaaaatctttaaattaccgttaattggatccacaaaatctggtttaa---taggaatatgagctatcttataccaatcgtcac |
310 |
Q |
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| T |
16917744 |
attacggaaaaatcttaaaattaccgttaattcgatgcacaaaatctgattcaaaattaggaacatgagctatcttataccaatcttcac |
16917655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 271
Target Start/End: Complemental strand, 16912767 - 16912523
Alignment:
| Q |
24 |
ttaaatcaaatccaaaatattttgcaatgatttgaatcatatacatgttcatcactcatggctcatcatcaacctccatgtccgattcactgtctgaatc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| |
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| T |
16912767 |
ttaaatcaaatccaaaatattttgcaatgatttgaatcatatacatgttcatcactcatggctcatca---acctccatgtccaattcattgtctgaatt |
16912671 |
T |
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| Q |
124 |
gctatactcttcttctgcacataacaattcaatgtgttagaaaacatcaagaattttatgagaatactggctttaggagaaaaggtaagttatttactaa |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||| ||||||||||| |
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| T |
16912670 |
gctatactcttcttctgcacataacaattcaatgtgttagaaaacatcaagaattttatgagaatactggctttagtaaaaaacgtaacttatttactaa |
16912571 |
T |
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| Q |
224 |
attacagaaaaatctttaaattaccgttaattggatccacaaaatctg |
271 |
Q |
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|||| || |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
16912570 |
attatagcaaaatctttaaattaccgttaattggatgcacaacatctg |
16912523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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