View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12110_low_18 (Length: 319)

Name: NF12110_low_18
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12110_low_18
NF12110_low_18
[»] chr1 (22 HSPs)
chr1 (13-289)||(17891411-17891684)
chr1 (142-181)||(5459171-5459210)
chr1 (142-181)||(31585792-31585831)
chr1 (11-78)||(38565009-38565076)
chr1 (11-118)||(42919675-42919782)
chr1 (142-181)||(46692851-46692890)
chr1 (142-180)||(7857664-7857702)
chr1 (142-180)||(41920463-41920501)
chr1 (142-180)||(46814499-46814537)
chr1 (138-234)||(13987577-13987674)
chr1 (11-58)||(9067577-9067624)
chr1 (142-181)||(17033596-17033635)
chr1 (142-180)||(4651791-4651829)
chr1 (142-180)||(15840944-15840982)
chr1 (142-180)||(24658940-24658978)
chr1 (142-180)||(38544770-38544808)
chr1 (148-180)||(6583254-6583286)
chr1 (148-180)||(19598647-19598679)
chr1 (148-180)||(24684516-24684548)
chr1 (148-180)||(27031878-27031910)
chr1 (148-180)||(27905423-27905455)
chr1 (140-180)||(38564912-38564952)
[»] chr5 (11 HSPs)
chr5 (13-247)||(18557480-18557709)
chr5 (146-236)||(25341652-25341743)
chr5 (142-180)||(13954266-13954304)
chr5 (142-180)||(34378109-34378147)
chr5 (148-180)||(33258920-33258952)
chr5 (143-186)||(12046260-12046303)
chr5 (148-179)||(39184225-39184256)
chr5 (142-180)||(7195271-7195309)
chr5 (142-180)||(7392063-7392101)
chr5 (142-180)||(23426355-23426393)
chr5 (141-236)||(39368816-39368912)
[»] chr8 (11 HSPs)
chr8 (19-236)||(544263-544477)
chr8 (19-236)||(40531188-40531398)
chr8 (142-181)||(24995427-24995466)
chr8 (142-181)||(31207394-31207433)
chr8 (148-181)||(34389043-34389076)
chr8 (148-180)||(33967337-33967369)
chr8 (142-181)||(32066327-32066366)
chr8 (142-180)||(15821411-15821449)
chr8 (142-180)||(15906697-15906735)
chr8 (141-178)||(31179859-31179896)
chr8 (148-180)||(36630848-36630880)
[»] chr2 (17 HSPs)
chr2 (13-113)||(14328168-14328268)
chr2 (13-233)||(44888227-44888443)
chr2 (136-180)||(4162046-4162090)
chr2 (142-181)||(10524107-10524146)
chr2 (142-180)||(14405209-14405247)
chr2 (142-180)||(22885165-22885203)
chr2 (142-180)||(33788664-33788702)
chr2 (138-234)||(9560816-9560913)
chr2 (148-180)||(1269494-1269526)
chr2 (142-181)||(39338897-39338936)
chr2 (142-180)||(7874302-7874340)
chr2 (142-180)||(14106556-14106594)
chr2 (142-180)||(15126442-15126480)
chr2 (148-185)||(23665442-23665479)
chr2 (148-180)||(10173616-10173648)
chr2 (148-180)||(16959993-16960025)
chr2 (149-236)||(42048255-42048343)
[»] chr7 (19 HSPs)
chr7 (39-247)||(35206629-35206831)
chr7 (138-226)||(27993564-27993653)
chr7 (142-181)||(38306271-38306310)
chr7 (138-234)||(46262147-46262244)
chr7 (142-182)||(13311848-13311888)
chr7 (142-180)||(6584920-6584958)
chr7 (142-180)||(9349760-9349798)
chr7 (142-180)||(34389973-34390011)
chr7 (142-180)||(38485567-38485605)
chr7 (142-180)||(41089780-41089818)
chr7 (142-178)||(10244195-10244231)
chr7 (143-178)||(8745166-8745201)
chr7 (148-179)||(17802854-17802885)
chr7 (142-176)||(3478367-3478401)
chr7 (142-180)||(6716768-6716806)
chr7 (148-182)||(9428143-9428177)
chr7 (142-180)||(42533284-42533322)
chr7 (148-185)||(25153226-25153263)
chr7 (142-182)||(11379159-11379199)
[»] chr4 (18 HSPs)
chr4 (148-234)||(37707393-37707480)
chr4 (141-185)||(40813812-40813856)
chr4 (138-180)||(53756767-53756809)
chr4 (148-180)||(31050700-31050732)
chr4 (148-180)||(39041312-39041344)
chr4 (142-181)||(4305735-4305774)
chr4 (142-181)||(38637264-38637303)
chr4 (142-177)||(39421045-39421080)
chr4 (146-180)||(2061774-2061808)
chr4 (142-180)||(25753183-25753221)
chr4 (148-180)||(8255038-8255070)
chr4 (148-180)||(8268456-8268488)
chr4 (138-174)||(17416537-17416573)
chr4 (148-180)||(21387242-21387274)
chr4 (148-176)||(26474851-26474879)
chr4 (148-180)||(36962653-36962685)
chr4 (148-180)||(38929838-38929870)
chr4 (142-182)||(46698817-46698857)
[»] chr6 (8 HSPs)
chr6 (142-180)||(26534751-26534789)
chr6 (142-180)||(26216051-26216089)
chr6 (13-124)||(12129278-12129390)
chr6 (138-180)||(7546457-7546499)
chr6 (146-180)||(16510337-16510371)
chr6 (142-180)||(32935371-32935409)
chr6 (142-176)||(34105428-34105462)
chr6 (148-180)||(34092806-34092838)
[»] chr3 (20 HSPs)
chr3 (138-180)||(20710736-20710778)
chr3 (142-181)||(17550967-17551006)
chr3 (142-181)||(34475786-34475825)
chr3 (142-180)||(14879446-14879484)
chr3 (142-180)||(19176513-19176551)
chr3 (142-176)||(37123397-37123431)
chr3 (142-180)||(14193951-14193989)
chr3 (142-180)||(14755297-14755335)
chr3 (142-180)||(40023604-40023642)
chr3 (142-180)||(43012386-43012424)
chr3 (142-180)||(47945717-47945755)
chr3 (138-234)||(3968578-3968675)
chr3 (138-234)||(4000130-4000227)
chr3 (151-180)||(24099368-24099397)
chr3 (145-177)||(2392541-2392573)
chr3 (145-177)||(2394288-2394320)
chr3 (142-182)||(5556579-5556619)
chr3 (136-176)||(23328376-23328416)
chr3 (142-186)||(30127267-30127311)
chr3 (148-180)||(45398807-45398839)
[»] scaffold0224 (1 HSPs)
scaffold0224 (11-118)||(18549-18656)
[»] scaffold0200 (1 HSPs)
scaffold0200 (148-180)||(19394-19426)
[»] scaffold0119 (1 HSPs)
scaffold0119 (148-180)||(42176-42208)
[»] scaffold0068 (1 HSPs)
scaffold0068 (142-181)||(35803-35842)
[»] scaffold1613 (1 HSPs)
scaffold1613 (142-180)||(1049-1087)
[»] scaffold0620 (2 HSPs)
scaffold0620 (142-180)||(3841-3879)
scaffold0620 (148-180)||(8140-8172)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 17891684 - 17891411
Alignment:
Q  13 gagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccgaa 112  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||| ||||||||| |||    
T  17891684 gagatcaaaaaagcagccgacgatgatatgttgcatcaaacgatcaaattcacacaccactcaacaaccgataaatcggaggagccaccaaaaagctgaa 17891585  T
Q  113 aagaacttgcatnnnnnnnnnctagctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaact 211  Q
    ||||||||||||           | || ||||||||||||||||||||||||||||| ||| |||||| || | ||||||| ||||| ||||||||||||    
T  17891584 aagaacttgcataaagaa-----aacttgctcccaatctcgaatcaaaagtgatcggtccatcagactcccaacacacatctacacggcacccctcaact 17891490  T
Q  212 tacaacccaccagagaagacaccttcacttgcccaagattttggatggactcttctattc-ttgtttgcttgagtctta 289  Q
     || | ||| ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17891489 cacgatccatcagagaagacaccttaacctgcccaagattttggatggactcttctattctttgtttgcttgagtctta 17891411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 5459210 - 5459171
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  5459210 ctcccgatctcgaatcaaaagtgatcggcccaccagacta 5459171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 31585792 - 31585831
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  31585792 ctcccgatctcgaatcaaaagtgatcggcccaccagacta 31585831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 78
Target Start/End: Complemental strand, 38565076 - 38565009
Alignment:
Q  11 cagagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaaca 78  Q
    ||||||||||||||||| || |||| |||||||||| ||||||||||| | || |||||| |||||||    
T  38565076 cagagatcaaaaaagcagccgacgacgatatgttgcttcaaacgatcagaatcgcccaccgctcaaca 38565009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 42919675 - 42919782
Alignment:
Q  11 cagagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccg 110  Q
    ||||||||||||||||| || ||||||||  || || ||||||||||| | || ||||||||||||||  ||||||  |||||||| |  ||| |||||     
T  42919675 cagagatcaaaaaagcagccgacgatgatgagtagcttcaaacgatcagagtcgcccaccactcaacatccgataagccggaggagacatcaacaagcct 42919774  T
Q  111 aaaagaac 118  Q
    ||||||||    
T  42919775 aaaagaac 42919782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 46692851 - 46692890
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  46692851 ctcccgatctcgaatcaaaagtgatcggcccaccagacta 46692890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 7857702 - 7857664
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  7857702 ctcccgatctcgaatcaaaagtgatcggcccaccagact 7857664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 41920501 - 41920463
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  41920501 ctcccgatctcgaatcaaaagtgatcggcccaccagact 41920463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 46814499 - 46814537
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  46814499 ctcccgatctcgaatcaaaagtgatcggcccaccagact 46814537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 13987674 - 13987577
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacacc 234  Q
    ||||||||| |||||||| |||||| ||| ||||||||||| | |||| ||| |||| || | |||||||||||| || | ||||||||| |||||||    
T  13987674 ctagctcccgatctcgaagcaaaagcgattggcccaccagattcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacacc 13987577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 9067624 - 9067577
Alignment:
Q  11 cagagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatca 58  Q
    |||||||||||| |||| ||||||||||| | ||||||||||||||||    
T  9067624 cagagatcaaaagagcagccaacgatgattttttgcatcaaacgatca 9067577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 17033635 - 17033596
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  17033635 ctcccgatctcgattcaaaagtgatcggcccaccagacta 17033596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 4651829 - 4651791
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  4651829 ctcccgatctcgaatcaaaagtgatcggccccccagact 4651791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 15840944 - 15840982
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  15840944 ctcccgatctcgaatcaaaagtgatcagcccaccagact 15840982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 24658978 - 24658940
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  24658978 ctcccgatctcgaatcaaaagtgattggcccaccagact 24658940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 38544770 - 38544808
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  38544770 ctcccgatctcgaatcaaaagcgatcggcccaccagact 38544808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 6583254 - 6583286
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||| ||||||||||    
T  6583254 atctcgaatcaaaagtgatcggtccaccagact 6583286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 19598679 - 19598647
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||| |||||||||||||||||    
T  19598679 atctcgaatcaaaagcgatcggcccaccagact 19598647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 24684516 - 24684548
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||| |||||||||||||||||||||||    
T  24684516 atctcgaattaaaagtgatcggcccaccagact 24684548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 27031878 - 27031910
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||||||||||||||| |||||    
T  27031878 atctcgaatcaaaagtgatcggcccactagact 27031910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 27905455 - 27905423
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||| ||||||||||    
T  27905455 atctcgaatcaaaagtgatcggtccaccagact 27905423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 38564952 - 38564912
Alignment:
Q  140 agctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||| ||||||||||||||| ||||||||||| |||||    
T  38564952 agctcccgatctcgaatcaaaagcgatcggcccacgagact 38564912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 7e-46; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 18557709 - 18557480
Alignment:
Q  13 gagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccgaa 112  Q
    ||||||||||||||| || | ||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| |||||||| ||||    
T  18557709 gagatcaaaaaagcagccgaggatgatatgttgcatcaaacgatcagattcacccaccactcaacaaccgataagtcggaggagccaccaaaaagtcgaa 18557610  T
Q  113 aagaacttgcatnnnnnnnnnctagctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaact 211  Q
    ||||||||||||           | |||||||   ||||||||||||||||||||||||||  ||||| |||| ||| ||||| ||| ||||||||||||    
T  18557609 aagaacttgcattaaaaa-----aactagctctggatctcgaatcaaaagtgatcggccca-tagactcccgacacaaatcaaaacggcacccctcaact 18557516  T
Q  212 tacaacccaccagagaagacaccttcacttgcccaa 247  Q
     || ||||||||||| ||||||||| || |||||||    
T  18557515 cacgacccaccagagtagacaccttaacctgcccaa 18557480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 25341743 - 25341652
Alignment:
Q  146 caatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacacctt 236  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||||||| || | ||||||| |||| || |  |||||||| ||| |||||    
T  25341743 caatctcaaatcaaaagtgatcggcccaccagactcccgacacacatcatcaaggcacccctgaactcacgaagcaccagagcagaaacctt 25341652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 13954266 - 13954304
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  13954266 ctcccgatctcgaatcaaaagtgatcggcccaccagact 13954304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 34378147 - 34378109
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  34378147 ctcccgatctcgaatcaaaagtgatcggcccaccagact 34378109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 33258920 - 33258952
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||||||||    
T  33258920 atctcgaatcaaaagtgatcggcccaccagact 33258952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 186
Target Start/End: Complemental strand, 12046303 - 12046260
Alignment:
Q  143 tcccaatctcgaatcaaaagtgatcggcccaccagactaccgaa 186  Q
    |||| ||||||||||||||||||||||||||||| ||| |||||    
T  12046303 tcccgatctcgaatcaaaagtgatcggcccaccaaacttccgaa 12046260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 179
Target Start/End: Original strand, 39184225 - 39184256
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagac 179  Q
    ||||||||||||||||||||||||||||||||    
T  39184225 atctcgaatcaaaagtgatcggcccaccagac 39184256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 7195271 - 7195309
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  7195271 ctcccgatctcgaatcaaaagtgatcggctcaccagact 7195309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 7392063 - 7392101
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  7392063 ctcccgatctcgaatcaaaagtgatcggtccaccagact 7392101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 23426393 - 23426355
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  23426393 ctcccaatctcgaatcaaaagtgttcggtccaccagact 23426355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 39368912 - 39368816
Alignment:
Q  141 gctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacacctt 236  Q
    |||||| | ||||||||||||| | ||||||||| ||||| |||| |||  |||| | |||||| ||||||| || | ||||||| |||||||||||    
T  39368912 gctcccgacctcgaatcaaaagcggtcggcccacaagactcccgacacaagtcaaaaagacacctctcaactcacgaaccaccagggaagacacctt 39368816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 544263 - 544477
Alignment:
Q  19 aaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccgaaaagaac 118  Q
    ||||||||| || || |||||||||||||||||||||||| |||||||||||||||||||| |||| | | ||||||||| | |||||||||||||||||    
T  544263 aaaaaagcagccgacaatgatatgttgcatcaaacgatcagattcacccaccactcaacaaccgatgagttggaggagccacaaaaaagccgaaaagaac 544362  T
Q  119 ttgcatnnnnnnnnnctagctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaac 217  Q
    ||||||           | |||||| || |||||||||| |||||||||| ||||||||||| |||| ||| ||||| ||| || || |||||| ||||     
T  544363 ttgcataaaaaaa----aactagcttccgatctcgaatctaaagtgatcgacccaccagactcccgacacaaatcaaaacggcatccgtcaactcacaat 544458  T
Q  218 ccaccagagaagacacctt 236  Q
    ||||||||| |||||||||    
T  544459 ccaccagagcagacacctt 544477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 40531398 - 40531188
Alignment:
Q  19 aaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccgaaaagaac 118  Q
    ||||||| | || ||||||||||||||||||| ||||||| |||||||||||||||||||| |||||| || |||||||| ||||||||||| |||||||    
T  40531398 aaaaaagtagccgacgatgatatgttgcatcacacgatcagattcacccaccactcaacaaccgataagtcagaggagccaccaaaaagccggaaagaac 40531299  T
Q  119 ttgcatnnnnnnnnnctagctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaac 217  Q
    |||||            | ||||||||| |||||||||||||||||||||||||| ||||||   || ||| ||||| ||| |||||||||||| |  ||    
T  40531298 ttgcaccaaaa------aactagctcccgatctcgaatcaaaagtgatcggcccatcagact--tgacacaaatcaaaacggcacccctcaactcaagac 40531207  T
Q  218 ccaccagagaagacacctt 236  Q
    ||||||||| |||||||||    
T  40531206 ccaccagagcagacacctt 40531188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 24995427 - 24995466
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  24995427 ctcccgatctcgaatcaaaagtgatcggcccaccagacta 24995466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 31207394 - 31207433
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  31207394 ctcccgatctcgaatcaaaagtgatcggcccaccagacta 31207433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 34389043 - 34389076
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||||||||||||||||||||||||||||||||    
T  34389043 atctcgaatcaaaagtgatcggcccaccagacta 34389076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 33967369 - 33967337
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||||||||    
T  33967369 atctcgaatcaaaagtgatcggcccaccagact 33967337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 32066327 - 32066366
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| || |||||||||||||||||||||||||||||||    
T  32066327 ctcccgatttcgaatcaaaagtgatcggcccaccagacta 32066366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 15821411 - 15821449
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  15821411 ctcccgatctcgaatcaaaagtgatcagcccaccagact 15821449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 15906735 - 15906697
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  15906735 ctcccgatctcgaatcaaatgtgatcggcccaccagact 15906697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 31179859 - 31179896
Alignment:
Q  141 gctcccaatctcgaatcaaaagtgatcggcccaccaga 178  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  31179859 gctcccaatctcagatcaaaagtgatcggcccaccaga 31179896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 36630880 - 36630848
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||| |||||||||||||||||||||||    
T  36630880 atctcgaattaaaagtgatcggcccaccagact 36630848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 14328268 - 14328168
Alignment:
Q  13 gagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccgaa 112  Q
    ||||| |||||||||||  | ||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||| | ||| |||||||    
T  14328268 gagataaaaaaagcaactgaagatgatatgttgcatcaaacgatcatattcacccaccactcaacaaccgataagtcggaggagccacaaaacagccgaa 14328169  T
Q  113 a 113  Q
    |    
T  14328168 a 14328168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 44888227 - 44888443
Alignment:
Q  13 gagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccgaa 112  Q
    ||||||||||||||| || |||||||| |||||||||||||||||| ||||  ||| ||||||||   |||||| ||||||||||| ||||||||||  |    
T  44888227 gagatcaaaaaagcagccgacgatgatttgttgcatcaaacgatcatattcgtccaacactcaacttccgataagtcggaggagccaccaaaaagcctga 44888326  T
Q  113 aagaacttgcatnnnnnnnnnctagctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaact 211  Q
     ||||||||| |           | ||||||||||||||||||| |||| |||||||||||||| ||| |||| | | ||||| | | ||||||||||||    
T  44888327 gagaacttgcgtcaaaaa-----aactagctcccaatctcgaataaaaaatgatcggcccaccaaactcccgacataaatcaataaggcacccctcaact 44888421  T
Q  212 tacaacccaccagagaagacac 233  Q
     || ||||||||||| ||||||    
T  44888422 cacgacccaccagagcagacac 44888443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 4162046 - 4162090
Alignment:
Q  136 agctagctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||| |||||| |||||||||||||||||||||||||||||||||    
T  4162046 agctggctcccgatctcgaatcaaaagtgatcggcccaccagact 4162090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 10524146 - 10524107
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  10524146 ctcccgatctcgaatcaaaagtgatcggcccaccagacta 10524107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 14405247 - 14405209
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  14405247 ctcccgatctcgaatcaaaagtgatcggcccaccagact 14405209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 22885165 - 22885203
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  22885165 ctcccgatctcgaatcaaaagtgatcggcccaccagact 22885203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 33788664 - 33788702
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  33788664 ctcccaatctcgaatcaaaagcgatcggcccaccagact 33788702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 9560816 - 9560913
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacacc 234  Q
    ||||||||| |||||||||||||||||||||| |||||| |||  ||| ||| |||| || | |||||||||||| || | | ||||||| |||||||    
T  9560816 ctagctcccgatctcgaatcaaaagtgatcggtccaccaaactttcgacacaaatcatcaaggcacccctcaactcacgaactaccagagcagacacc 9560913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 1269526 - 1269494
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||||||||    
T  1269526 atctcgaatcaaaagtgatcggcccaccagact 1269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 39338897 - 39338936
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||| ||||||||||||||||||    
T  39338897 ctcccgatctcgaatcaaaagcgatcggcccaccagacta 39338936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 7874340 - 7874302
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  7874340 ctcccgatctcgaatcaaaagtgatcgacccaccagact 7874302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 14106556 - 14106594
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  14106556 ctcccgatcttgaatcaaaagtgatcggcccaccagact 14106594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 15126442 - 15126480
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  15126442 ctcccgatctcgaatcaaaaatgatcggcccaccagact 15126480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 23665442 - 23665479
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagactaccga 185  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  23665442 atctcgaatcaaaagtgatcggcccactagactcccga 23665479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 10173616 - 10173648
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||||||||||||||| |||||    
T  10173616 atctcgaatcaaaagtgatcggcccactagact 10173648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 16960025 - 16959993
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||| |||||||||||||||||    
T  16960025 atctcgaatcaaaagcgatcggcccaccagact 16959993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 42048255 - 42048343
Alignment:
Q  149 tctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacacctt 236  Q
    ||||||||||||||||||| ||||| | |||| |||| | | ||||||| | |||| ||||||| || | ||||||||| |||||||||    
T  42048255 tctcgaatcaaaagtgatcagcccatcggactcccgacagaaatcaacaaggcacctctcaactcacgaaccaccagagcagacacctt 42048343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 39 - 247
Target Start/End: Original strand, 35206629 - 35206831
Alignment:
Q  39 tatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccgaaaagaacttgcatnnnnnnnnnctagc 138  Q
    |||||||||||||| ||||| |||||||||||||| ||| |  ||||| ||| ||||||| || ||||||||||||||||||||||           | |    
T  35206629 tatgttgcatcaaaggatcagattcacccaccactaaactactgataagtcgaaggagccacc-aaaagccgaaaagaacttgcattaaaa------aac 35206721  T
Q  139 tagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacaccttc 237  Q
    |||||||| |||||| |||||||||||||||||||||||||| || | ||| || || | |  ||||||||||| |  ||||||||||| |||||||||     
T  35206722 tagctcccgatctcggatcaaaagtgatcggcccaccagactcccaacacaaataaaaaagggacccctcaactcatgacccaccagagcagacacctta 35206821  T
Q  238 acttgcccaa 247  Q
    ||||| ||||    
T  35206822 acttgtccaa 35206831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 27993564 - 27993653
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagag 226  Q
    ||||||||| |||||||||||||||||||||| |||||||||| |||| ||| ||||  | |||||||||||||| || | |||||||||    
T  27993564 ctagctcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatcataaagacacccctcaactcacgaaccaccagag 27993653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 38306310 - 38306271
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  38306310 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 38306271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 46262147 - 46262244
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccgaacac--atcaacacgacacccctcaacttacaacccaccagagaagacacc 234  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || |||||  ||||| | | |||||||||||| || |  |||| |||||||||||    
T  46262147 ctagctcccgatctcgaatcaaaagtgatcggcccaccagact-cccaacaccaatcaaaaaggcacccctcaactcacgaatcaccggagaagacacc 46262244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 13311888 - 13311848
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagactac 182  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  13311888 ctcccgatctcgaatcaaaagtgatcggcccaccagactac 13311848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 6584958 - 6584920
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  6584958 ctcccgatctcgaatcaaaagtgatcggcccaccagact 6584920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 9349798 - 9349760
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  9349798 ctcccgatctcgaatcaaaagtgatcggcccaccagact 9349760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 34390011 - 34389973
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  34390011 ctcccgatctcgaatcaaaagtgatcggcccaccagact 34389973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 38485605 - 38485567
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  38485605 ctcccgatctcgaatcaaaagtgatcggcccaccagact 38485567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 41089780 - 41089818
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  41089780 ctcccaatctcgaatcaaaagtgatcggtccaccagact 41089818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 10244231 - 10244195
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccaga 178  Q
    ||||| |||||||||||||||||||||||||||||||    
T  10244231 ctcccgatctcgaatcaaaagtgatcggcccaccaga 10244195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 178
Target Start/End: Complemental strand, 8745201 - 8745166
Alignment:
Q  143 tcccaatctcgaatcaaaagtgatcggcccaccaga 178  Q
    |||| |||||||||||||||||||||||||||||||    
T  8745201 tcccgatctcgaatcaaaagtgatcggcccaccaga 8745166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 179
Target Start/End: Original strand, 17802854 - 17802885
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagac 179  Q
    ||||||||||||||||||||||||||||||||    
T  17802854 atctcgaatcaaaagtgatcggcccaccagac 17802885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 3478401 - 3478367
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccacca 176  Q
    ||||| |||||||||||||||||||||||||||||    
T  3478401 ctcccgatctcgaatcaaaagtgatcggcccacca 3478367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 6716768 - 6716806
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  6716768 ctcccgatctcgaatcaaaagtgatcggccaaccagact 6716806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 9428143 - 9428177
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagactac 182  Q
    ||||||||||||||||||||||| |||||||||||    
T  9428143 atctcgaatcaaaagtgatcggctcaccagactac 9428177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 42533284 - 42533322
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  42533284 ctcccgatctcgaatcaaaagtgatcagcccaccagact 42533322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 25153263 - 25153226
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagactaccga 185  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  25153263 atctcgaatcaaaagtgatcggtccaccagactcccga 25153226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 11379159 - 11379199
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagactac 182  Q
    ||||| ||||||||||||||| ||||||| |||||||||||    
T  11379159 ctcccgatctcgaatcaaaagcgatcggctcaccagactac 11379199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 234
Target Start/End: Original strand, 37707393 - 37707480
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacacc 234  Q
    ||||||||||||||||||||||||||||||||| |||| ||| | ||| | | |||||||||||| || | ||||||||| |||||||    
T  37707393 atctcgaatcaaaagtgatcggcccaccagactcccgacacatagcaaaaaggcacccctcaactcacgaaccaccagagcagacacc 37707480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 40813812 - 40813856
Alignment:
Q  141 gctcccaatctcgaatcaaaagtgatcggcccaccagactaccga 185  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||    
T  40813812 gctcccgatctcgaatcaaaagtgatcggcccaccagactcccga 40813856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 53756809 - 53756767
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  53756809 ctagcttccgatctcgaatcaaaagtgatcggcccaccagact 53756767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 31050700 - 31050732
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||||||||    
T  31050700 atctcgaatcaaaagtgatcggcccaccagact 31050732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 39041312 - 39041344
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||||||||    
T  39041312 atctcgaatcaaaagtgatcggcccaccagact 39041344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 4305774 - 4305735
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||| ||||||||||||    
T  4305774 ctcccgatctcgaatcaaaagtgatcgccccaccagacta 4305735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 38637264 - 38637303
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  38637264 ctcccgatctcgaatcaaaagtgatcggcccgccagacta 38637303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 39421045 - 39421080
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccag 177  Q
    ||||| ||||||||||||||||||||||||||||||    
T  39421045 ctcccgatctcgaatcaaaagtgatcggcccaccag 39421080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 2061774 - 2061808
Alignment:
Q  146 caatctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||| ||||||||||||    
T  2061774 caatctcgaatcaaaagtgatcagcccaccagact 2061808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 25753221 - 25753183
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  25753221 ctcccgatctcgaatcaaaagtgatcgccccaccagact 25753183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 8255070 - 8255038
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||| ||||||||||||||||||||||||||    
T  8255070 atctcggatcaaaagtgatcggcccaccagact 8255038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 8268488 - 8268456
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||| ||||||||||||||||||||||||||    
T  8268488 atctcggatcaaaagtgatcggcccaccagact 8268456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 174
Target Start/End: Original strand, 17416537 - 17416573
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccac 174  Q
    ||||||||  |||||||||||||||||||||||||||    
T  17416537 ctagctcctgatctcgaatcaaaagtgatcggcccac 17416573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 21387242 - 21387274
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||| ||||||||||    
T  21387242 atctcgaatcaaaagtgatcggtccaccagact 21387274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 176
Target Start/End: Complemental strand, 26474879 - 26474851
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccacca 176  Q
    |||||||||||||||||||||||||||||    
T  26474879 atctcgaatcaaaagtgatcggcccacca 26474851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 36962653 - 36962685
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||| ||||||||||||||||    
T  36962653 atctcgaatcaaaagtaatcggcccaccagact 36962685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 38929870 - 38929838
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||| ||||||    
T  38929870 atctcgaatcaaaagtgatcggcccagcagact 38929838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 46698817 - 46698857
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagactac 182  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  46698817 ctcccgatctcgaatcaaaagcaatcggcccaccagactac 46698857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 26534751 - 26534789
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26534751 ctcccaatctcgaatcaaaagtgatcggcccaccagact 26534789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 26216051 - 26216089
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  26216051 ctcccgatctcgaatcaaaagtgatcggcccaccagact 26216089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 12129390 - 12129278
Alignment:
Q  13 gagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgcc-aaaaagccga 111  Q
    ||||| |||||||||  | | ||||||| ||||||||||||||||| | || |||||||||||||   |||||| || |||||| | || |||||| | |    
T  12129390 gagataaaaaaagcagtcgatgatgataagttgcatcaaacgatcagaatcgcccaccactcaacttccgataagtcagaggagtcaccaaaaaagtcta 12129291  T
Q  112 aaagaacttgcat 124  Q
    |||||||||||||    
T  12129290 aaagaacttgcat 12129278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 7546457 - 7546499
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||| || |||||||||||||||||||||| ||||||||||    
T  7546457 ctagcttccgatctcgaatcaaaagtgatcggtccaccagact 7546499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 16510337 - 16510371
Alignment:
Q  146 caatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||||||||||||||||| |||||    
T  16510337 caatctcgaatcaaaagtgatcggcccactagact 16510371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 32935371 - 32935409
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  32935371 ctcccgatctcgaatcaaaagcgatcggcccaccagact 32935409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 34105462 - 34105428
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccacca 176  Q
    ||||| |||||||||||||||||||||||||||||    
T  34105462 ctcccgatctcgaatcaaaagtgatcggcccacca 34105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 34092838 - 34092806
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||||||||||| |||||||||    
T  34092838 atctcgaatcaaaagtgatcggctcaccagact 34092806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 20710736 - 20710778
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  20710736 ctagctcccgatctcgaatcaaaagtgatcggcccaccagact 20710778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 17551006 - 17550967
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  17551006 ctcccgatctcgaatcaaaagtgatcggcccaccagacta 17550967  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 34475786 - 34475825
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  34475786 ctcccgatctcgaatcaaaagtgatcggcccaccagacta 34475825  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 14879484 - 14879446
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  14879484 ctcccgatctcgaatcaaaagtgatcggcccaccagact 14879446  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 19176551 - 19176513
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  19176551 ctcccgatctcgaatcaaaagtgatcggcccaccagact 19176513  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 176
Target Start/End: Complemental strand, 37123431 - 37123397
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccacca 176  Q
    |||||||||||||||||||||||||||||||||||    
T  37123431 ctcccaatctcgaatcaaaagtgatcggcccacca 37123397  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 14193989 - 14193951
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||| || |||||||    
T  14193989 ctcccaatctcgaatcaaaagtgatcggtccgccagact 14193951  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 14755297 - 14755335
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  14755297 ctcccgatcttgaatcaaaagtgatcggcccaccagact 14755335  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 40023604 - 40023642
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  40023604 ctcccgatctcgaatcaaaagtgatcggtccaccagact 40023642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 43012424 - 43012386
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  43012424 ctcccgatctcgaatcaaaagtgatcgggccaccagact 43012386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 47945755 - 47945717
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  47945755 ctcccgatctcgaatcaaaagtgatcggcccaccggact 47945717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 234
Target Start/End: Original strand, 3968578 - 3968675
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacacc 234  Q
    ||||||||  |||||||| |||||| ||| || |||||||||| |||| ||| |||| || | |||||||||||| || | ||||||||| |||||||    
T  3968578 ctagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacacc 3968675  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 4000227 - 4000130
Alignment:
Q  138 ctagctcccaatctcgaatcaaaagtgatcggcccaccagactaccga-acacatcaacacgacacccctcaacttacaacccaccagagaagacacc 234  Q
    ||||||||  |||||||| |||||| ||| || |||||||||| |||| ||| |||| || | |||||||||||| || | ||||||||| |||||||    
T  4000227 ctagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatcatcaaggcacccctcaactcacgaaccaccagagcagacacc 4000130  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 180
Target Start/End: Original strand, 24099368 - 24099397
Alignment:
Q  151 tcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||||||||||||||||||    
T  24099368 tcgaatcaaaagtgatcggcccaccagact 24099397  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 2392541 - 2392573
Alignment:
Q  145 ccaatctcgaatcaaaagtgatcggcccaccag 177  Q
    ||||||||||||||||||||||||| |||||||    
T  2392541 ccaatctcgaatcaaaagtgatcggtccaccag 2392573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 2394288 - 2394320
Alignment:
Q  145 ccaatctcgaatcaaaagtgatcggcccaccag 177  Q
    ||||||||||||||||||||||||| |||||||    
T  2394288 ccaatctcgaatcaaaagtgatcggtccaccag 2394320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 5556619 - 5556579
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagactac 182  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  5556619 ctcccgatctcgaatcaaaagcgatcgccccaccagactac 5556579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 23328376 - 23328416
Alignment:
Q  136 agctagctcccaatctcgaatcaaaagtgatcggcccacca 176  Q
    ||||| ||||| |||||||||||||||||||||| ||||||    
T  23328376 agctaactcccgatctcgaatcaaaagtgatcggtccacca 23328416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 30127311 - 30127267
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagactaccgaa 186  Q
    ||||| ||||||||||||||| ||||||| ||||||||| |||||    
T  30127311 ctcccgatctcgaatcaaaagcgatcggctcaccagactcccgaa 30127267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 45398839 - 45398807
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||| ||||||||||    
T  45398839 atctcgaatcaaaagtgatcggtccaccagact 45398807  T

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Target: scaffold0224 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 18656 - 18549
Alignment:
Q  11 cagagatcaaaaaagcaaccaacgatgatatgttgcatcaaacgatcaaattcacccaccactcaacaatcgataattcggaggagccgccaaaaagccg 110  Q
    ||||||||||||||||| || ||||||||  || || ||||||||||| | || ||||||||||||||  ||||||  |||||||| |  ||| |||||     
T  18656 cagagatcaaaaaagcagccgacgatgatgagtagcttcaaacgatcagagtcgcccaccactcaacatccgataagccggaggagacatcaacaagcct 18557  T
Q  111 aaaagaac 118  Q
    ||||||||    
T  18556 aaaagaac 18549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 19426 - 19394
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||||||||    
T  19426 atctcgaatcaaaagtgatcggcccaccagact 19394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 42176 - 42208
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    |||||||||||||||||||||||||||||||||    
T  42176 atctcgaatcaaaagtgatcggcccaccagact 42208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 35803 - 35842
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagacta 181  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  35803 ctcccgatctcgaatcaaaagtgatcggcccactagacta 35842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 1049 - 1087
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  1049 ctcccgatctcgaatcaaaagcgatcggcccaccagact 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 3879 - 3841
Alignment:
Q  142 ctcccaatctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  3879 ctcccgatctcgaatcaaaattgatcggcccaccagact 3841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 8172 - 8140
Alignment:
Q  148 atctcgaatcaaaagtgatcggcccaccagact 180  Q
    ||||||||||||||||||||||| |||||||||    
T  8172 atctcgaatcaaaagtgatcggctcaccagact 8140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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