View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12110_low_2 (Length: 656)

Name: NF12110_low_2
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12110_low_2
NF12110_low_2
[»] chr7 (1 HSPs)
chr7 (1-648)||(48695474-48696129)


Alignment Details
Target: chr7 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 1 - 648
Target Start/End: Original strand, 48695474 - 48696129
Alignment:
Q  1 tgagcctgaatccttggagtcccacttctactgtccaacaacaaacaaagccaaaggaagcagcaggacaaagctagctggctggctagggtggaactcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48695474 tgagcctgaatccttggagtcccacttctactgtccaacaacaaacaaagccaaaggaagcagcaggacaaagctagctggctggctagggtggaactcc 48695573  T
Q  101 aatttcccaatgttttattcattcattcattattatactttttaagtacatatatagatgtacatgtaggtatgttaatgtaagcccgcccaaactgagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48695574 aatttcccaatgttttattcattcattcattattatactttttaagtacatatatagatgtacatgtaggtatgttaatgtaagcccgcccaaactgagg 48695673  T
Q  201 cagcagcaatcaatcaatcaaagttgtacattatacaaatactctgagaatagaaaattaaatttaaaacaaaccaggaagtaactatgctgaccgttgt 300  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  48695674 cagcagcaatcaatcaatcaaagttgtatattatacaaatactctgagaatagaaaattaaatttaaaacaaaccaggaagtaactgtgctgaccattgt 48695773  T
Q  301 aaacaagaaccaaaataaaatggtactgtcttctgtctgtgaccaccgtcttcttggcc--------ctctctctctcactcacacacgggccatacaag 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  48695774 aaacaagaaccaaaataaaatggtactgtcttctgtctgtgaccaccgtcttcttggccctctctctctctctctctcactcacacacgggccatacaag 48695873  T
Q  393 tgcactctttgccatcaagcaagacatcatcttctctcaaggttttgcgtgcaaatagaaataatctttcaaaacaagtggattcaagtttccgaatgat 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  48695874 tgcactctttgccatcaagcaagacatcatcttctctcaaggttttgcgtgcaaatagaaataatctttcaaaacaagtggattcaagtttccaaatgat 48695973  T
Q  493 acccccaagcaaatcaaatctctcacaaaacaagtagtaactgttaagttaaacagtttagagtctttccattatgtgactgttgtgctgtgctgttaaa 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48695974 acccccaagcaaatcaaatctctcacaaaacaagtagtaactgttacgttaaacagtttagagtctttccattatgtgactgttgtgctgtgctgttaaa 48696073  T
Q  593 gcaggtgattcaaactacataatcgtttacagaaattacatctccaccacaggttc 648  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48696074 gcaggtgattcaaactacataatcgtttacagaaattacatctccaccacaggttc 48696129  T

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