View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12110_low_20 (Length: 276)
Name: NF12110_low_20
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12110_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 98 - 259
Target Start/End: Complemental strand, 23965595 - 23965433
Alignment:
| Q |
98 |
aatgaaattgggttagagaa-ttagatatgcataaggtgacataccctattcagagatgagacagagaaacaactgtaaacatgttcaaagatctcattg |
196 |
Q |
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| T |
23965595 |
aatgaaattgggttagagaagttagatatgcataaggtgacataccctattcagagatgagacagagaaacaactgtaaacatgttcaaagatctcattg |
23965496 |
T |
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| Q |
197 |
tgtcgtacattccactgatactcatgaatatcatcattatgatcctcagacaaatcctgattc |
259 |
Q |
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| T |
23965495 |
tgtcgtatattccactgatactcatgaatatcatcattatgatcctcagacaaatcctgattc |
23965433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 102 - 198
Target Start/End: Complemental strand, 23989580 - 23989483
Alignment:
| Q |
102 |
aaattgggttagagaa-ttagatatgcataaggtgacataccctattcagagatgagacagagaaacaactgtaaacatgttcaaagatctcattgtg |
198 |
Q |
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| T |
23989580 |
aaattgggttagagaagttagatatacatcatgtgacatacccttttaagagatgagaccgggaaacaactgtaaacatgttcaaagatctcattgtg |
23989483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 23965921 - 23965854
Alignment:
| Q |
15 |
gtgctcctctaaaagtcttatgtttaactctcctcaatattatatttatttaggtgtgctagtttaccttctt |
87 |
Q |
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| T |
23965921 |
gtgctcctctaaaagtcttatgtttaactctcctcaa-----tatttatttaggtgtgctagtttagcttctt |
23965854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 23982898 - 23982805
Alignment:
| Q |
102 |
aaattgggttagagaa-ttagatatgcataaggtgacataccctattcagagatgagacagagaaacaactgtaaacatgttcaaagatctcat |
194 |
Q |
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| T |
23982898 |
aaattgggttagagaagttagatatacatcatgtgacatacccttttaagagacgagattggtaaacaactgtaaaattgttcaaaggtctcat |
23982805 |
T |
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