View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12110_low_21 (Length: 253)

Name: NF12110_low_21
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12110_low_21
NF12110_low_21
[»] chr1 (3 HSPs)
chr1 (1-238)||(11328412-11328646)
chr1 (1-238)||(11486433-11486667)
chr1 (40-238)||(37374372-37374570)


Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11328646 - 11328412
Alignment:
Q  1 tgtcaagggtcttcacatcgatgaagatgcacgtgaagatgaagatgttatcatgcatgatgatgaagaagcagatgtttcggctaaggaaacgaaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  11328646 tgtcaagggtcttcacatcgatgaagatgcacgtgaagatgaagatgttatcatgcatgatgatgaag---cagatgtttcggctaaggaaacgaaagat 11328550  T
Q  101 gaggctggtgagtggactgaagttaaagaaactcaaaagaacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11328549 gaggctggtgagtggactgaagttaaagaaactcaaaagaacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaag 11328450  T
Q  201 ttgctctagggaaaggaatgtttggtgcattgaaactg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11328449 ttgctctagggaaaggaatgtttggtgcattgaaactg 11328412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 11486667 - 11486433
Alignment:
Q  1 tgtcaagggtcttcacatcgatgaagatgcacgtgaagatgaagatgttatcatgcatgatgatgaagaagcagatgtttcggctaaggaaacgaaagat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  11486667 tgtcaagggtcttcacatcgatgaagatgcacgtgaagatgaagatgttatcatgcatgatgatgaag---cagatgtttcggctaaggaaacgaaagat 11486571  T
Q  101 gaggctggtgagtggactgaagttaaagaaactcaaaagaacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11486570 gaggctggtgagtggactgaagttaaagaaactcaaaagaacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaag 11486471  T
Q  201 ttgctctagggaaaggaatgtttggtgcattgaaactg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11486470 ttgctctagggaaaggaatgtttggtgcattgaaactg 11486433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 37374570 - 37374372
Alignment:
Q  40 tgaagatgttatcatgcatgatgatgaagaagcagatgtttcggctaaggaaacgaaagatgaggctggtgagtggactgaagttaaagaaactcaaaag 139  Q
    |||||||||| ||||| | ||||| ||||| |||  |||| | | | |||||| ||| || |||||||||| ||||||||||||||| ||||||||||      
T  37374570 tgaagatgttttcatggaagatgacgaagaggcacctgttcctgttgaggaaaagaatgacgaggctggtgggtggactgaagttaatgaaactcaaata 37374471  T
Q  140 aacgagcaacttaactcagaagacacggaggaaatagtttcatatgaaactatacgcgaagttgctctagggaaaggaatgtttggtgcattgaaactg 238  Q
     |||||||||  ||||||||||||| |||||| |||||| |  ||||||||||||  ||||||||| ||||||||||| ||| ||| ||||||||||||    
T  37374470 gacgagcaacccaactcagaagacaaggaggagatagttcctgatgaaactatacatgaagttgctgtagggaaaggactgtctggagcattgaaactg 37374372  T

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