View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12110_low_3 (Length: 549)

Name: NF12110_low_3
Description: NF12110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12110_low_3
NF12110_low_3
[»] chr7 (15 HSPs)
chr7 (73-533)||(4654451-4654915)
chr7 (209-517)||(4644663-4644987)
chr7 (300-533)||(4637809-4638051)
chr7 (401-517)||(4673677-4673793)
chr7 (425-533)||(4711116-4711224)
chr7 (179-259)||(4674521-4674601)
chr7 (457-533)||(4663651-4663727)
chr7 (425-533)||(4696213-4696321)
chr7 (425-533)||(4845044-4845152)
chr7 (401-490)||(4864926-4865015)
chr7 (300-381)||(4673828-4673913)
chr7 (198-298)||(4673929-4674033)
chr7 (10-51)||(4654937-4654977)
chr7 (187-259)||(4795057-4795127)
chr7 (24-52)||(15028957-15028985)


Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 73 - 533
Target Start/End: Complemental strand, 4654915 - 4654451
Alignment:
Q  73 tgtttagtttgataaaattataatttttctttttagtcatagnnnnnnnnaaatatgtgtgaactgtgaaataaataaatatgtcactccaatattgtnn 172  Q
    ||||||||||||||||||||||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||      
T  4654915 tgtttagtttgataaaattataatttttctttt-agtcatagtttttct-aaatatgtgtgaactgtgaaataaataaatatgtcactccaatattgtaa 4654818  T
Q  173 nnnnnn-tgaagtgcattagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattat-----cctaatt 266  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||    
T  4654817 aaaaaaatgaagtgcattagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattatgtgatcctaatt 4654718  T
Q  267 gctccccaaggaaatcatttgaccatttcaatcatcagtctcaagtgctgttttatggaaatttcccttcctactcaatgtataagataataataaataa 366  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4654717 gctccccaaggaaatcatttgaccatttcaatgatcagtctcaagtgctgttttatggaaatttcccttcctactcaatgtataagataataataaataa 4654618  T
Q  367 agcaacttctacgtatcattcatattaatctattttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaaatgag 466  Q
    ||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  4654617 agcaacttctacgtaccattcaaattgatctattttcttcacactcttctcacacagatatggcaaactccataaacaaaaacatttacacaaaaatgag 4654518  T
Q  467 catactatctctctttttgctattgttccctctaattgcttactcatacaaccctgattacaattta 533  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4654517 catactatctctctttttgctattgttccctctaattgcttactcatacaaccctgattacaattta 4654451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 209 - 517
Target Start/End: Complemental strand, 4644987 - 4644663
Alignment:
Q  209 tatggttttcaattgataaaa-agaaatgagtgttttcctatc--cacaatta-----tcctaattgctccccaaggaaatcatttgaccatttcaatca 300  Q
    ||||||||| |||| |||||| ||||||||| |||||||||||  ||||||||     ||||||||||| |||||||| ||||||||||||||||||| |    
T  4644987 tatggttttgaatt-ataaaacagaaatgagagttttcctatctccacaattacgtgatcctaattgcttcccaaggagatcatttgaccatttcaatga 4644889  T
Q  301 tcagtctcaagtgctgttttatggaaatttcccttcctac---tcaatgtataagat-----aataataaataaa-gcaacttctacgtatcattcatat 391  Q
    ||||||||||||| ||||||||||||||||||||||||||   | ||||||| | ||     ||||||||||||| |||||||||||||| |||||| ||    
T  4644888 tcagtctcaagtgttgttttatggaaatttcccttcctacctctaaatgtatcaaatctaataataataaataaatgcaacttctacgtaccattcaaat 4644789  T
Q  392 taatctattttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaaatgagcatactatctctctttttgctattg 491  Q
    |||| ||| |||||||| |||||||||||||  |||||||||| |||||||||||| || |||||||||||| |||||||| |||||| |||||||| ||    
T  4644788 taatgtatcttcttcactctcttctcacacaactatggcaaacaccataaacaaaaaaaattacacaaaaatcagcatactttctctcattttgctactg 4644689  T
Q  492 ttccctctaattgcttactcatacaa 517  Q
    ||||||||| | |||  |||||||||    
T  4644688 ttccctctactagctacctcatacaa 4644663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 300 - 533
Target Start/End: Complemental strand, 4638051 - 4637809
Alignment:
Q  300 atcagtctcaagtgctgttttatggaaatttcccttcctac---tcaatgtat--aag---ataataataaataaa-gcaacttctacgtatcattcata 390  Q
    |||| ||||||||| |||||||||| ||||||| |||||||   |||||||||  ||    ||||||||||||||| |||||||||||||| |||||| |    
T  4638051 atcactctcaagtgttgttttatgggaatttcctttcctacctctcaatgtatctaatctaataataataaataaatgcaacttctacgtaccattcaaa 4637952  T
Q  391 ttaatctattttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaaatgagcatactatctctctttttgctatt 490  Q
    ||||| ||| |||||||| |||||||||||||| |||||||||||||||||||||||  |||||||||||||| ||||||||||| |||||||||||| |    
T  4637951 ttaatgtatcttcttcactctcttctcacacagctatggcaaactccataaacaaaaacatttacacaaaaatcagcatactatccctctttttgctact 4637852  T
Q  491 gttccctctaattgcttactcatacaaccctgattacaattta 533  Q
     |||||| || ||||| ||||||||||||||||||||||||||    
T  4637851 tttccctttagttgctaactcatacaaccctgattacaattta 4637809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 401 - 517
Target Start/End: Complemental strand, 4673793 - 4673677
Alignment:
Q  401 ttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaaatgagcatactatctctctttttgctattgttccctcta 500  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||| | | ||||| | ||| ||||||| ||||||||||||    
T  4673793 ttcttcaccctcttctcacacagctatggcaaactccataaacaaaaaaaattacacaaaaatcaccctactaccgctcattttgctcttgttccctcta 4673694  T
Q  501 attgcttactcatacaa 517  Q
     |||||  |||||||||    
T  4673693 gttgctacctcatacaa 4673677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 425 - 533
Target Start/End: Original strand, 4711116 - 4711224
Alignment:
Q  425 tatggcaaactccataaacaaaacaatttacacaaaaatgagcatactatctctctttttgctattgttccctctaattgcttactcatacaaccctgat 524  Q
    ||||||||||||||||||| ||| | || |||| ||||| | | |||||||||||| |||||| |||||||||||| ||||| |||||||||||||||||    
T  4711116 tatggcaaactccataaacgaaaaatttcacactaaaattaccctactatctctctatttgctcttgttccctctagttgctaactcatacaaccctgat 4711215  T
Q  525 tacaattta 533  Q
    |||||||||    
T  4711216 tacaattta 4711224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 4674601 - 4674521
Alignment:
Q  179 tgaagtgcattagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattat 259  Q
    ||||||||||||||||| ||||||||||| |||| |||||| ||  |||||||||||||||||||||||||||||||||||    
T  4674601 tgaagtgcattagtatttttatttccttcgtatgattttcagttagtaaaaagaaatgagtgttttcctatccacaattat 4674521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 457 - 533
Target Start/End: Complemental strand, 4663727 - 4663651
Alignment:
Q  457 caaaaatgagcatactatctctctttttgctattgttccctctaattgcttactcatacaaccctgattacaattta 533  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||   ||||||||||    
T  4663727 caaaaatcagcatactatctctcattttgctattgttccctctaattgctacctcatacaacccaatttacaattta 4663651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 533
Target Start/End: Original strand, 4696213 - 4696321
Alignment:
Q  425 tatggcaaactccataaacaaaacaatttacacaaaaatgagcatactatctctctttttgctattgttccctctaattgcttactcatacaaccctgat 524  Q
    |||||||||||||| |||||||| | || |||| ||||| | | | ||||||||| |||||||||||||||||||| |||||  ||||||| |||||  |    
T  4696213 tatggcaaactccagaaacaaaaaatttcacactaaaatcatcctgctatctctcattttgctattgttccctctagttgctacctcatacgaccctatt 4696312  T
Q  525 tacaattta 533  Q
    |||||||||    
T  4696313 tacaattta 4696321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 533
Target Start/End: Original strand, 4845044 - 4845152
Alignment:
Q  425 tatggcaaactccataaacaaaacaatttacacaaaaatgagcatactatctctctttttgctattgttccctctaattgcttactcatacaaccctgat 524  Q
    |||| |||||||||||||||||| | || |||| ||||| | | |||||||| ||| |||| | |||||||||||| ||  | |||||||||||||||||    
T  4845044 tatgccaaactccataaacaaaaaatttcacactaaaatcaccctactatctatctatttggttttgttccctctagttattaactcatacaaccctgat 4845143  T
Q  525 tacaattta 533  Q
    |||||||||    
T  4845144 tacaattta 4845152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 490
Target Start/End: Complemental strand, 4865015 - 4864926
Alignment:
Q  401 ttcttcacactcttctcacacagatatggcaaactccataaacaaaacaatttacacaaaaatgagcatactatctctctttttgctatt 490  Q
    |||||||| |||||||||||||  |||||||||||| |||||||| | | ||||||| ||||| | | ||||||||||| |||| |||||    
T  4865015 ttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaactttacactaaaatcaccctactatctctccttttcctatt 4864926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 381
Target Start/End: Complemental strand, 4673913 - 4673828
Alignment:
Q  300 atcagtctcaagtgctgttttatggaaatttcccttccta---ctcaatgtataagataataataaataaa-gcaacttctacgta 381  Q
    |||||||||||||| | ||||||  |||| ||||||||||   |||||||||||  |||||||||| |||| ||||||||||||||    
T  4673913 atcagtctcaagtgtttttttataaaaatctcccttcctacctctcaatgtatataataataataattaaaggcaacttctacgta 4673828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 198 - 298
Target Start/End: Complemental strand, 4674033 - 4673929
Alignment:
Q  198 tatttccttcctatggttttcaattgataaaa-agaaatgagtgttttcctatccacaattat-----cctaattgctccccaaggaaatcatttgacca 291  Q
    |||||| ||| ||||||||| |||| |||||| ||||||||  |||| |||||||||||||||     ||||||| || || ||||||||||||||||||    
T  4674033 tatttctttcgtatggtttttaatt-ataaaacagaaatgaaagttt-cctatccacaattatgtgatcctaatttcttcctaaggaaatcatttgacca 4673936  T
Q  292 tttcaat 298  Q
    |||||||    
T  4673935 tttcaat 4673929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Complemental strand, 4654977 - 4654937
Alignment:
Q  10 gaacctgtgcatcaacatttaaaatatgtgaacttcagccac 51  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  4654977 gaacctgtacatcaacatttaaaa-atgtgaacttcagccac 4654937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 4795127 - 4795057
Alignment:
Q  187 attagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattat 259  Q
    |||||||||  |||||||||| |||||||||  ||| |||||||  ||| ||||||||||||||||| |||||    
T  4795127 attagtatttctatttccttcgtatggtttttcattaataaaaa--aattagtgttttcctatccacgattat 4795057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 52
Target Start/End: Complemental strand, 15028985 - 15028957
Alignment:
Q  24 acatttaaaatatgtgaacttcagccact 52  Q
    |||||||||||||||||||||||||||||    
T  15028985 acatttaaaatatgtgaacttcagccact 15028957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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