View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_high_1 (Length: 707)
Name: NF12111_high_1
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 43716128 - 43716544
Alignment:
| Q |
1 |
aagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcctgcaggtggtggctcaattaatgataattattcaaag |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43716128 |
aagaagaagctagaaaaaataataacaaattaacaatcatttacaatcaccagatcccactcctgcaggtggtggctcaattaatgataataattcaaag |
43716227 |
T |
|
| Q |
101 |
atcacatcacatacagaggaaatcatattccacaaactctgttgataccctttgaaatataataattgtccaaagaaaccagaatatctgcagaataaac |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716228 |
atca-----catacagaggaaatcatattccacaaactctgttgataccctttgaaatataataattgtccaaagaaaccagaatatctgcagaataaac |
43716322 |
T |
|
| Q |
201 |
taatcgagtaaacatgtagaaaatatataaagactcatattaacttagatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaataa |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716323 |
taatcgagtaaacatgtagaaaatatataaagacttatattaacttagatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaat-- |
43716420 |
T |
|
| Q |
301 |
agacttatcttcaggtttactgggagacactgattcatctctagc-tttctatgttattaacatataaaaagaagttgaaaagtaatgaacttttgtaag |
399 |
Q |
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| T |
43716421 |
agacttatcttcaggtttactgggagacactgattcatctctagcttttctatgttattaacatataaaaagaagttgaaaagtaatgaacttttgtaag |
43716520 |
T |
|
| Q |
400 |
gcgaagaagataagttgagatgaa |
423 |
Q |
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| T |
43716521 |
gcgaagaagataagttgagatgaa |
43716544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 460 - 627
Target Start/End: Original strand, 43716542 - 43716709
Alignment:
| Q |
460 |
gaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatattgttggagagaaaaaagtcatatatggtaca |
559 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716542 |
gaaatcaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatattgttggagagaaaaaagtcatatatggtaca |
43716641 |
T |
|
| Q |
560 |
atctccaaaatttcttcaaaaacatctgtaaccatgcatagaagataatggaaataaacataaccaag |
627 |
Q |
| |
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| T |
43716642 |
atctccaaaaaaaattcaaaaacatctgtaaccatgcatagaagataatggaaataaacataaccaag |
43716709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 447 - 616
Target Start/End: Complemental strand, 6814847 - 6814679
Alignment:
| Q |
447 |
ccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatattgttggagagaaaaaagt |
546 |
Q |
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||||||||||||| |||| || |||||||||| | || ||||||||||| |||||||||| ||||||| ||||| ||||||| ||| |||||||| || |
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| T |
6814847 |
ccatacttggaaaaaaatcgattgcccaatctgccaatgcttccatcatcactggccaaagactccacatatccagagatattgatggtgagaaaaatgt |
6814748 |
T |
|
| Q |
547 |
catatatggtacaatctccaaaatttcttcaaaaacatctgtaaccatgcatagaagataatggaaataa |
616 |
Q |
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| T |
6814747 |
catatatgatacaatctccaaaacttcttcgaaaacctctgtaagcatgcatag-agataatgaaaataa |
6814679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 638 - 691
Target Start/End: Original strand, 43717187 - 43717240
Alignment:
| Q |
638 |
gtaggctcgatttgtacaaaaagttgaggaagactgttcactgattcaagtatt |
691 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43717187 |
gtaggctcgatttgtacaaaaagttgaggaagactgttcactgattcaagtatt |
43717240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 4e-89; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 331 - 622
Target Start/End: Complemental strand, 52887439 - 52887152
Alignment:
| Q |
331 |
tgattcatctctagctttctatgttattaacatataaaaa-gaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaattgtag |
429 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||||| ||||| ||| ||| |||||||||| ||||| |||| ||||||||||| ||||| | |
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| T |
52887439 |
tgattcatctctagctgtctaagttattaacaagtaaaaaagaagtccaaa-gtactgaacttttggaaggcaaaga---taagttgagat-aattgcaa |
52887345 |
T |
|
| Q |
430 |
tcagatgtatttgagagccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
529 |
Q |
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||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52887344 |
tcaaatgtagttgagagccatacttgaaaagaaatcaatagcccaatctgatagtgcttccatcatcaatggccaaaggttccacatgtccagtgatatt |
52887245 |
T |
|
| Q |
530 |
gttggagagaaaaaagtcatatatggtacaatctccaaaatttcttcaaaaacatctgtaaccatgcatagaagataatggaaataaacataa |
622 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||| |
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| T |
52887244 |
gttggagagaaaaaagtcatatatgatacaatctccaaaatttcttcaaaaacctctgtaagcatgcatagaagacaatggaaataaatataa |
52887152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 52891490 - 52891346
Alignment:
| Q |
1 |
aagaagaagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcctg------caggtggtggctcaattaatgataattat |
94 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||||||| || |
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| T |
52891490 |
aagaagaagctagaaaaaataataa---gttaacaatcatttacaatcaccagatcccattccagtcctagcaggtggtggccaaattaatgataataat |
52891394 |
T |
|
| Q |
95 |
tcaaagatcacatcacatacagaggaaatcatattccacaaactctgttgata |
147 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
52891393 |
tcaaagatcactt-----acagaggaaatcatattccacaaactctgttgata |
52891346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 52891029 - 52890957
Alignment:
| Q |
227 |
ataaagactcatattaacttagatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaata |
299 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52891029 |
ataaagacttatattaacttaaatgtcagagcaaccaggaaaatatttgacagatattccatgtttttgaata |
52890957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 52891300 - 52891238
Alignment:
| Q |
162 |
ataattgtccaaagaaaccagaatatctgcagaataaactaatcgagtaaacatgtagaaaat |
224 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
52891300 |
ataattgtccaaaggaaccataatatctgcagaataaactaatcaagtaaatatgtagaaaat |
52891238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 638 - 691
Target Start/End: Complemental strand, 52886597 - 52886544
Alignment:
| Q |
638 |
gtaggctcgatttgtacaaaaagttgaggaagactgttcactgattcaagtatt |
691 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
52886597 |
gtaggctcgatttgaacaaaaagttgaggaagactgctcactgattcaagtatt |
52886544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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