View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12111_high_13 (Length: 376)

Name: NF12111_high_13
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12111_high_13
NF12111_high_13
[»] chr6 (5 HSPs)
chr6 (18-364)||(8349361-8349707)
chr6 (35-78)||(2117486-2117529)
chr6 (46-83)||(3738195-3738232)
chr6 (28-81)||(33911223-33911276)
chr6 (29-65)||(32515061-32515097)
[»] chr7 (6 HSPs)
chr7 (40-79)||(25297054-25297093)
chr7 (30-80)||(8094384-8094434)
chr7 (30-83)||(30496783-30496836)
chr7 (27-83)||(39542239-39542295)
chr7 (30-70)||(13960675-13960715)
chr7 (36-80)||(32791687-32791731)
[»] chr2 (4 HSPs)
chr2 (30-80)||(11513974-11514024)
chr2 (30-69)||(36677730-36677769)
chr2 (34-84)||(33087562-33087612)
chr2 (32-80)||(41240790-41240838)
[»] chr8 (5 HSPs)
chr8 (30-80)||(4763972-4764022)
chr8 (31-80)||(9700080-9700129)
chr8 (33-83)||(1664450-1664500)
chr8 (30-80)||(7918723-7918773)
chr8 (30-83)||(16162838-16162891)
[»] chr4 (3 HSPs)
chr4 (35-83)||(25896867-25896915)
chr4 (30-83)||(50746053-50746106)
chr4 (23-59)||(49004004-49004040)
[»] chr5 (2 HSPs)
chr5 (30-69)||(10152412-10152451)
chr5 (30-83)||(26516485-26516538)
[»] chr3 (8 HSPs)
chr3 (33-80)||(45590732-45590779)
chr3 (30-69)||(47584528-47584567)
chr3 (30-80)||(44295605-44295655)
chr3 (35-80)||(27795955-27796000)
chr3 (30-83)||(44014737-44014790)
chr3 (33-81)||(13709777-13709825)
chr3 (28-76)||(42530336-42530384)
chr3 (34-78)||(42809375-42809419)
[»] chr1 (5 HSPs)
chr1 (33-80)||(6659761-6659808)
chr1 (30-77)||(43371836-43371883)
chr1 (34-83)||(32515380-32515429)
chr1 (36-80)||(1662657-1662701)
chr1 (30-83)||(23370241-23370296)
[»] scaffold0199 (1 HSPs)
scaffold0199 (33-83)||(6891-6941)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 8349707 - 8349361
Alignment:
Q  18 actactaacttattttcataagctctcttaaatagtctcacatgtgcttatgctagtagataaacttccaaacagccctaaaggtatcacaactcaaatt 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8349707 actactaacttattttcataagctctctaaaatagtctcacatgtacttatgctagtagataaacttccaaacagccctaaaggtatcacagctcaaatt 8349608  T
Q  118 aacttttctttagagtatgtgattaatgatgataatttttactttattgcaggaaaggaaaaatatacaagcttcttctaagtctctcagtatcaatctt 217  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8349607 aacttttctttagattatgtgattaatgattagaatttttactttattgcaggaaaggaaaaatatacaagcttcttctaagtctctcagtatcaatctt 8349508  T
Q  218 cacatcagcatgtcaatatggtctaccattcctagtaaaatgtacaccatgtgatgatctatcaatgtgtcctacaaatggaaaatcaggaaactacaaa 317  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8349507 cacatcagcatgtcaatatggtcttccattcctagtaaaatgtacaccatgtgatgatctatcaatgtgtcctacaaatggaaaatcaggaaactacaaa 8349408  T
Q  318 caattcaactgtccaaatggccattacaatgacctagctactcttct 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8349407 caattcaactgtccaaatggccattacaatgacctagctactcttct 8349361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 2117486 - 2117529
Alignment:
Q  35 ataagctctcttaaatagtctcacatgtgcttatgctagtagat 78  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||    
T  2117486 ataagctcacttgaatagtctcacaggtgcttatgctagtagat 2117529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 3738195 - 3738232
Alignment:
Q  46 taaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  3738195 taaacagtctcacaagtgcttatgctagtagataaact 3738232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 33911276 - 33911223
Alignment:
Q  28 tattttcataagctctcttaaatagtctcacatgtgcttatgctagtagataaa 81  Q
    |||||||||||| ||||||||| ||| ||||  |||||| ||||||||||||||    
T  33911276 tattttcataagatctcttaaacagtttcacgagtgcttgtgctagtagataaa 33911223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 32515097 - 32515061
Alignment:
Q  29 attttcataagctctcttaaatagtctcacatgtgct 65  Q
    ||||||||||||| || ||||||||||||||||||||    
T  32515097 attttcataagctttcctaaatagtctcacatgtgct 32515061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 25297054 - 25297093
Alignment:
Q  40 ctctcttaaatagtctcacatgtgcttatgctagtagata 79  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25297054 ctctcttaaatagtctcacatgtgcttatgctagtagata 25297093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 8094384 - 8094434
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    |||||||||  ||||| ||||||||||||| ||||||||||||||||||||    
T  8094384 ttttcataaaatctctcaaatagtctcacaagtgcttatgctagtagataa 8094434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 30496783 - 30496836
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||||||||||||||| || ||||||| || | |||||||||||||||||||||    
T  30496783 ttttcataagctctctcaagtagtctcgcaagggcttatgctagtagataaact 30496836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 39542295 - 39542239
Alignment:
Q  27 ttattttcataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||||| |||||||||||| |||  ||||| || |||||||||||||||||||||||    
T  39542295 ttatttccataagctctctaaaactgtctcgcaagtgcttatgctagtagataaact 39542239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 13960715 - 13960675
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgc 70  Q
    |||||||||||||||| |||||||||| || ||||||||||    
T  13960715 ttttcataagctctctcaaatagtctcgcaagtgcttatgc 13960675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 32791731 - 32791687
Alignment:
Q  36 taagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    |||| |||| |||||||||||||  ||||||||||||||||||||    
T  32791731 taagttctcctaaatagtctcactagtgcttatgctagtagataa 32791687  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 11513974 - 11514024
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  11513974 ttttcataagctctctaaaacagtctcacaagtgcttatgctagtagataa 11514024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 36677730 - 36677769
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatg 69  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  36677730 ttttcataagctctcttgaatagtctcacaagtgcttatg 36677769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 33087612 - 33087562
Alignment:
Q  34 cataagctctcttaaatagtctcacatgtgcttatgctagtagataaactt 84  Q
    ||||| || ||| |||||||| ||||||||||||||||||| |||||||||    
T  33087612 cataaactatctcaaatagtcacacatgtgcttatgctagtggataaactt 33087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 41240838 - 41240790
Alignment:
Q  32 ttcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    |||||||||||||||||| ||| |||||  |||||||||||||| ||||    
T  41240838 ttcataagctctcttaaacagtttcacaaatgcttatgctagtatataa 41240790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 4763972 - 4764022
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    |||||| ||||||||||||||||||||| | |||||||||||||| |||||    
T  4763972 ttttcaaaagctctcttaaatagtctcataggtgcttatgctagtggataa 4764022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 9700080 - 9700129
Alignment:
Q  31 tttcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    ||||| ||||||||| ||||||||||||| ||| ||||||||||||||||    
T  9700080 tttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataa 9700129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 1664450 - 1664500
Alignment:
Q  33 tcataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    ||||||||||||  ||| ||||||||| ||| |||||||||||||||||||    
T  1664450 tcataagctctcccaaacagtctcacaagtgtttatgctagtagataaact 1664500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 7918773 - 7918723
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    |||||||||||||||  ||| ||||||||| ||| ||||||||||||||||    
T  7918773 ttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataa 7918723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 16162838 - 16162891
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||||||||| | ||| ||| ||||||||| ||| |||||||||||||||||||    
T  16162838 ttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaact 16162891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 25896867 - 25896915
Alignment:
Q  35 ataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||||||||| |||| ||||||||| ||||| |||||||||||||||||    
T  25896867 ataagctctcctaaacagtctcacaagtgctaatgctagtagataaact 25896915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 50746053 - 50746106
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    ||||||||| ||| |  ||||||||||||| |||||||||| ||||||||||||    
T  50746053 ttttcataaactcacacaaatagtctcacaagtgcttatgcaagtagataaact 50746106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 49004040 - 49004004
Alignment:
Q  23 taacttattttcataagctctcttaaatagtctcaca 59  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  49004040 taacttattttcataagttctctcaaatagtctcaca 49004004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 10152412 - 10152451
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatg 69  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  10152412 ttttcataagctctccaaaatagtctcacatgtgcttatg 10152451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 26516485 - 26516538
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||||||||||||||||||| | || |||| |||||||||| |||| |||||||    
T  26516485 ttttcataagctctcttaaacattcccacaggtgcttatgccagtaaataaact 26516538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 45590732 - 45590779
Alignment:
Q  33 tcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    ||||||||||||  ||| ||||||||| ||||||||||||||||||||    
T  45590732 tcataagctctcccaaacagtctcacaagtgcttatgctagtagataa 45590779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 47584528 - 47584567
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatg 69  Q
    |||||||||||||||| ||||||||||||| |||||||||    
T  47584528 ttttcataagctctctcaaatagtctcacaagtgcttatg 47584567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 44295605 - 44295655
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    |||||||||| ||||| ||||||| ||||| ||||||||||| ||||||||    
T  44295605 ttttcataagttctctcaaatagtatcacaagtgcttatgcttgtagataa 44295655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 80
Target Start/End: Complemental strand, 27796000 - 27795955
Alignment:
Q  35 ataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    ||||||||||||||| ||| ||||| |||||||||| |||||||||    
T  27796000 ataagctctcttaaacagtttcacaagtgcttatgccagtagataa 27795955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 44014790 - 44014737
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||||||||| | ||| ||| ||||||||| ||| |||||||||||||||||||    
T  44014790 ttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaact 44014737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 13709825 - 13709777
Alignment:
Q  33 tcataagctctcttaaatagtctcacatgtgcttatgctagtagataaa 81  Q
    |||||| ||||| |||||||||||||| |||||||| | ||||||||||    
T  13709825 tcataaactctcctaaatagtctcacaagtgcttatcccagtagataaa 13709777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 42530336 - 42530384
Alignment:
Q  28 tattttcataagctctcttaaatagtctcacatgtgcttatgctagtag 76  Q
    ||||| |||||||| ||| ||| ||||||||| ||||||||||||||||    
T  42530336 tatttccataagctttctgaaacagtctcacaagtgcttatgctagtag 42530384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 42809375 - 42809419
Alignment:
Q  34 cataagctctcttaaatagtctcacatgtgcttatgctagtagat 78  Q
    |||||||||| |||||| |||||||| ||||| ||||||||||||    
T  42809375 cataagctcttttaaattgtctcacaagtgctaatgctagtagat 42809419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 6659761 - 6659808
Alignment:
Q  33 tcataagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    ||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  6659761 tcataagctatcccaaatagtctcacaagtgcttatgctagtagataa 6659808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 43371883 - 43371836
Alignment:
Q  30 ttttcataagctctcttaaatagtctcacatgtgcttatgctagtaga 77  Q
    |||||||||||||||| ||| ||||||||| |||||||||| ||||||    
T  43371883 ttttcataagctctctcaaacagtctcacaagtgcttatgccagtaga 43371836  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 32515429 - 32515380
Alignment:
Q  34 cataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||||||||||  ||| ||||||||| ||||||||| |||||||||||||    
T  32515429 cataagctctcccaaacagtctcacaagtgcttatgttagtagataaact 32515380  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 1662657 - 1662701
Alignment:
Q  36 taagctctcttaaatagtctcacatgtgcttatgctagtagataa 80  Q
    |||||||||  |||||||||| ||||| |||||||||||||||||    
T  1662657 taagctctcgcaaatagtctcgcatgtacttatgctagtagataa 1662701  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 23370296 - 23370241
Alignment:
Q  30 ttttcataagctctctt--aaatagtctcacatgtgcttatgctagtagataaact 83  Q
    |||||||||||||||||  ||| ||||||||| ||||||||||| ||| |||||||    
T  23370296 ttttcataagctctcttttaaacagtctcacaagtgcttatgcttgtacataaact 23370241  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 6891 - 6941
Alignment:
Q  33 tcataagctctcttaaatagtctcacatgtgcttatgctagtagataaact 83  Q
    ||||||||||||  ||| ||||||||| ||| |||||||||||||||||||    
T  6891 tcataagctctcccaaacagtctcacaagtgtttatgctagtagataaact 6941  T

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