View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12111_high_3 (Length: 650)
Name: NF12111_high_3
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 603; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 1629790 - 1630425
Alignment:
| Q |
1 |
tcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1629790 |
tcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggacgctgatcttagcgcc |
1629889 |
T |
|
| Q |
101 |
acagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatccaagagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629890 |
acagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatccaagagta |
1629989 |
T |
|
| Q |
201 |
attatttaaaataaaaaattaaagtaattgtatg----taagaaagcctcaagtataatttaaatattataaacctatcttattataaaaatttagaact |
296 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629990 |
attatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagtataatttaaatattataaacctatcttattataaaaatttagaact |
1630089 |
T |
|
| Q |
297 |
tcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaact |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630090 |
tcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaact |
1630189 |
T |
|
| Q |
397 |
tgttattatggtattttgcataccatcaccaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgt |
496 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630190 |
tgttattatggtattttgcatcccatcaccaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgt |
1630289 |
T |
|
| Q |
497 |
atcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1630290 |
atcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgt |
1630389 |
T |
|
| Q |
597 |
actttactggagacttagactgcaaaagcttccttt |
632 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
1630390 |
actttactggagacttagactgcaaaagcttccttt |
1630425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 324 - 632
Target Start/End: Original strand, 1624142 - 1624450
Alignment:
| Q |
324 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
423 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1624241 |
T |
|
| Q |
424 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1624242 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1624341 |
T |
|
| Q |
524 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaa |
623 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1624342 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaa |
1624441 |
T |
|
| Q |
624 |
gcttccttt |
632 |
Q |
| |
|
||||||||| |
|
|
| T |
1624442 |
gcttccttt |
1624450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 324 - 632
Target Start/End: Original strand, 1607121 - 1607429
Alignment:
| Q |
324 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatc |
423 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1607220 |
T |
|
| Q |
424 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1607221 |
accaaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctc |
1607320 |
T |
|
| Q |
524 |
ttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaa |
623 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
1607321 |
ttagcagcagcatttaaagcagcctgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactttactggaccctttgactgcaaaa |
1607420 |
T |
|
| Q |
624 |
gcttccttt |
632 |
Q |
| |
|
||||||||| |
|
|
| T |
1607421 |
gcttccttt |
1607429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 326 - 632
Target Start/End: Complemental strand, 10820160 - 10819854
Alignment:
| Q |
326 |
gagatggaatataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcac |
425 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
426 |
caaccagcataatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctctt |
525 |
Q |
| |
|
| |||| |||||| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||| |
|
|
| T |
10820060 |
cgaccaacataatgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctctt |
10819961 |
T |
|
| Q |
526 |
agcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagc |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
10819960 |
agcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcattggagacttagactgcaaaagc |
10819861 |
T |
|
| Q |
626 |
ttccttt |
632 |
Q |
| |
|
||||||| |
|
|
| T |
10819860 |
ttccttt |
10819854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 315
Target Start/End: Complemental strand, 10820904 - 10820598
Alignment:
| Q |
5 |
taaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacag |
104 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| ||||| ||||| | |||||| ||||| || |||||||| |||||||||| |||||||| | |
|
|
| T |
10820904 |
taaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtacaccggtagaagacggagagatcagaggctgatcggagcgccactg |
10820805 |
T |
|
| Q |
105 |
cttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaatta |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10820804 |
cttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaatta |
10820705 |
T |
|
| Q |
205 |
tttaaaataaaaaattaaagtaattgtatgtaagaaagcctcaagtataatttaaatattataaacctatcttattataaaaatttagaacttcaaatga |
304 |
Q |
| |
|
||||||| | || |||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||| | |
|
|
| T |
10820704 |
tttaaaa----atatgaaagtaattgtaggtaagaaagccacaattataatttaaatattataaacctatcttagtataaaattttagaacttcaaaata |
10820609 |
T |
|
| Q |
305 |
taaaataaaaa |
315 |
Q |
| |
|
||||||||||| |
|
|
| T |
10820608 |
taaaataaaaa |
10820598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 1606492 - 1606689
Alignment:
| Q |
1 |
tcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606492 |
tcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgcc |
1606591 |
T |
|
| Q |
101 |
acagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
198 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606592 |
actgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
1606689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 1623621 - 1623811
Alignment:
| Q |
8 |
aattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagctt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| || ||||||||||||||||||| ||||||||||||| |
|
|
| T |
1623621 |
aattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcacaccgatagaagacagagagatcggaggctgatcggagcgccacagctt |
1623720 |
T |
|
| Q |
108 |
gacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
198 |
Q |
| |
|
| || ||||| ||||| || |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||| |||||||| ||| |||||| |
|
|
| T |
1623721 |
ggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaaatgaagtccatcaatgcctgaatttaaaagattcaagag |
1623811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 335 - 632
Target Start/End: Original strand, 18785179 - 18785476
Alignment:
| Q |
335 |
tataactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagca |
434 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaaca |
18785278 |
T |
|
| Q |
435 |
taatattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
534 |
Q |
| |
|
|||| || ||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785279 |
taatgttatcattgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagc |
18785378 |
T |
|
| Q |
535 |
atttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactttactggagacttagactgcaaaagcttccttt |
632 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18785379 |
atttagagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaatattgtactttactggagacttagactgcaaaagcttccttt |
18785476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 5 - 198
Target Start/End: Original strand, 18781312 - 18781505
Alignment:
| Q |
5 |
taaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacag |
104 |
Q |
| |
|
|||||||||||||| ||||| ||||| || |||||||| || || ||||| |||||||||||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
18781312 |
taaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatatagcacaccgatagaagacagagagatcggaggctgatcggagcgccacag |
18781411 |
T |
|
| Q |
105 |
cttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgcaatgaagtgaagtccatcaatacctaaatttaaatgatccaagag |
198 |
Q |
| |
|
||||||| || || ||||| || |||||||||||||||||||| || |||||||| |||||||||||||| ||| |||||||| ||| |||||| |
|
|
| T |
18781412 |
cttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggcaatgaaatgaagtccatcaatgcctgaatttaaaagattcaagag |
18781505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 343 - 549
Target Start/End: Original strand, 12803384 - 12803590
Alignment:
| Q |
343 |
acctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagcataatattg |
442 |
Q |
| |
|
|||||| || ||||||||||| || ||| ||||| |||||||| ||||| ||||||||| | |||||| | |||||||| |||| ||||||||| |
|
|
| T |
12803384 |
acctgcagtggcagagctataggtagtaaaaccagcttgaacatttctattacttgttatcactgtatttctacttccatcacctaccaacataatatta |
12803483 |
T |
|
| Q |
443 |
tcatt-atgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaa |
541 |
Q |
| |
|
||||| || | ||||| |||| ||||||||||||||||||||||| ||| |||| ||||| ||||| ||| | ||||| | |||||||||||| | |
|
|
| T |
12803484 |
tcattcatcttcc-caaccacaatattctctctataaacacctttcttcacacgtataacaaatcttgttttaaaccttctcctcccagcagcatttata |
12803582 |
T |
|
| Q |
542 |
gcagcttg |
549 |
Q |
| |
|
||| |||| |
|
|
| T |
12803583 |
gcatcttg |
12803590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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