View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_high_7 (Length: 448)
Name: NF12111_high_7
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 21 - 396
Target Start/End: Complemental strand, 3596631 - 3596269
Alignment:
| Q |
21 |
aagagtgttaaaattggagcctttatcattaattgtaaaggttgcaaaaaagtagcagttgaactgtaaaccaaatgttgctatatagaaacgtctgatg |
120 |
Q |
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|||||||||||||||||||| ||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3596631 |
aagagtgttaaaattggagcatttatcattaaatggagaggttgcaaaaaagtagcagttgaactgtaaaccaaatgttgctatatagaaacgtctgatg |
3596532 |
T |
|
| Q |
121 |
caaaacaaaaaagatagatagaa------aacctttgaatttatgagtcggattaatcaaagaaattacacttgtaaatatacatgacggaggaatgacc |
214 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| |||||||||||||| |
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| T |
3596531 |
caaaacaaaaaagacagatagaaaattctaacctttgaatttatgagtcggattaatcaaagaaatcacacttataaacatacaccacggaggaatgacc |
3596432 |
T |
|
| Q |
215 |
aaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatccaattaataagtatttttaaccttaagctatatagtattttaacaagtac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
3596431 |
aaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggat----ttaa---------------ttaagctatatagtattttaacaagtac |
3596351 |
T |
|
| Q |
315 |
caagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaatgttccatttg |
396 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
3596350 |
caagacataaacatcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaatcagaatattccatttg |
3596269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 105 - 264
Target Start/End: Complemental strand, 3573562 - 3573397
Alignment:
| Q |
105 |
atagaaacgtctgatgcaaaacaaaaaagatagatagaaaa------cctttgaatttatgagtcggattaatcaaagaaattacacttgtaaatataca |
198 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
3573562 |
atagaaacgtctgatgaaaaacaaaaaagatagatagaaaattctaaccttcgaatttatgaatcggattaatcaaagaaatcacacttgtaaatataca |
3573463 |
T |
|
| Q |
199 |
tgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
264 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3573462 |
tgacggaggaatgaccaaacaaaggatattgttgaaatcgtcatcctcatcatcaagcattggatc |
3573397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 144 - 264
Target Start/End: Complemental strand, 3586230 - 3586110
Alignment:
| Q |
144 |
aacctttgaatttatgagtcggattaatcaaagaaattacacttgtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatc |
243 |
Q |
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|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| | || |||||||||| |||||| |
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| T |
3586230 |
aacctttgaatttatgagtcggattaatcaaagaaatcacactcgtaaatatacatgacggaggattgaccaaacaaaggatgttgttgaaatagtcatc |
3586131 |
T |
|
| Q |
244 |
ctcatcatcaagcattggatc |
264 |
Q |
| |
|
|||| |||||||||||||||| |
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| T |
3586130 |
ctcaacatcaagcattggatc |
3586110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 165 - 264
Target Start/End: Complemental strand, 3595345 - 3595246
Alignment:
| Q |
165 |
gattaatcaaagaaattacacttgtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
264 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |
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| T |
3595345 |
gattaatcaaagaaatcacactcgtaaatatacatgacggtggaatgaccaaacaaaggatattgttgaaatcgtcatcctcatcgtcaagcattggatc |
3595246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 3568210 - 3568134
Alignment:
| Q |
188 |
gtaaatatacatgacggaggaatgaccaaacaatgaatattgttgaaatcgtcatcctcatcatcaagcattggatc |
264 |
Q |
| |
|
||||||||| ||| | || |||||||||||||| ||| |||||||||| |||||||| ||| ||||||| ||||| |
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| T |
3568210 |
gtaaatatatatggctgatgaatgaccaaacaaaagataatgttgaaatcatcatcctcctcaacaagcatcggatc |
3568134 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 283 - 396
Target Start/End: Original strand, 4375783 - 4375902
Alignment:
| Q |
283 |
aaccttaagctatatagtatt------ttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatt |
376 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
4375783 |
aaccttaagctatatagtattaagcttttaaaaagtaccaagacataaacatcaataatagtcaaattctaggtatttaatctagaaaatctttcaaatt |
4375882 |
T |
|
| Q |
377 |
taataagaatgttccatttg |
396 |
Q |
| |
|
|||| ||||| ||||||||| |
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| T |
4375883 |
taatcagaatcttccatttg |
4375902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 4388481 - 4388575
Alignment:
| Q |
302 |
ttttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaatgttccatttg |
396 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||| ||||||||| |
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| T |
4388481 |
ttttaacaagtaccaagatataaacatcgataacagtcaaattctaggtatttaatctagaaaatctttcaaatttaatcagaatcttccatttg |
4388575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 358
Target Start/End: Original strand, 4383423 - 4383476
Alignment:
| Q |
303 |
tttaacaagtaccaagacataaacgtcgataatagtcaaattctaagtatttaatc |
358 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||||||||| |||||||||| |
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| T |
4383423 |
tttaacaagtaccaaga--taaacatcgataatagtcaaattctaggtatttaatc |
4383476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 335 - 395
Target Start/End: Complemental strand, 5727019 - 5726959
Alignment:
| Q |
335 |
tagtcaaattctaagtatttaatctagaaaatctttaaaatttaataagaatgttccattt |
395 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| ||||| ||| ||||| | |||||| |
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|
| T |
5727019 |
tagtcaaattctatgtatttaatctagaaaatatttcaaattcaattagaatctcccattt |
5726959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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