View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_high_8 (Length: 442)
Name: NF12111_high_8
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 139 - 428
Target Start/End: Original strand, 5690492 - 5690784
Alignment:
| Q |
139 |
aattaaaccgacaataaa-ctaccaataattttgatcacaaaaataaaatatagaagagaattaatagaaagaaatttactttgttgctaaaggggacca |
237 |
Q |
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||||||||||| |||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5690492 |
aattaaaccgataataaaactatcaataattttgatcacaaagataaaatatagaggagaattaataaaaagaaatttactttgttgctaaaggggacca |
5690591 |
T |
|
| Q |
238 |
aatcaccaagagaattgacacttttattgcttaatctcaagtaagctgggctaccacggtctctctcattaagctcatacacatgcatttcttgaacttt |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690592 |
aatcaccaagagaattgacacttttattgcttaatctcaagtaagctgggctaccacggtctctctcattaagctcatacacatgcatttcttgaacttt |
5690691 |
T |
|
| Q |
338 |
ttctgcaaattaaatcaaagaaac--nnnnnnnntgtatcaattaaaagatcaagaaacttttgaaaaatatgtatatttggtatgaaatttt |
428 |
Q |
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| T |
5690692 |
ttctgcaaattaaatcaaagaaacaaaaaaaaaatgtatcaattaaaaaatcaagaaacttttgaaaaatatgtatatttggtatgatatttt |
5690784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 5690147 - 5690271
Alignment:
| Q |
13 |
tgtgttcgattaaaatgcaaataccagttgttattccaatacgtttttgtagatctcctgtgtataactgcataatacaagattaatattaatttaatta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5690147 |
tgtgttcgattaaaatgcaaataccagttgttattccaatacgtttttgtagatctcctgtgtataactgcataattcaagattaatattaatttaatta |
5690246 |
T |
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| Q |
113 |
gtaacattttcacatgcatcaccaa |
137 |
Q |
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| T |
5690247 |
gtaacatttgcacaatcatcaccaa |
5690271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 139 - 423
Target Start/End: Original strand, 26248584 - 26248863
Alignment:
| Q |
139 |
aattaaaccgacaataaactaccaataattttgatcacaaaaataaaatatagaagagaattaatagaaagaaatttactttgttgctaaaggggaccaa |
238 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||| || |
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| T |
26248584 |
aattaaaccgataaaaaactaccaataattttgatcacaaaaatataa-----aagagaattaatagaaagaaatttactttgttgctgaaggagactaa |
26248678 |
T |
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| Q |
239 |
atcaccaagagaattgacacttttattgcttaatctcaagtaagctgggctaccacggtctctctcattaagctcatacacatgcatttcttgaactttt |
338 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
26248679 |
gtcaccaagagaattgacacttttattgcttaacctcgagtaagcagggctaccacggtcactctcattaaactcatacacatgcatttcttgaactttt |
26248778 |
T |
|
| Q |
339 |
tctgcaaattaaatcaaagaaacnnnnnnnntgtatcaattaaaagatcaagaaacttttgaaaaatatgtatatttggtatgaa |
423 |
Q |
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|||||||| | |||||||||||| ||||||||| |||| | |||||||||||||||||| | |||||||||||||||| |
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| T |
26248779 |
tctgcaaaatcaatcaaagaaacaaaaaaaatgtatcaataaaaaaaccaagaaacttttgaaaaacacgtatatttggtatgaa |
26248863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 205 - 342
Target Start/End: Original strand, 25914985 - 25915122
Alignment:
| Q |
205 |
gaaagaaatttactttgttgctaaaggggaccaaatcaccaagagaattgacacttttattgcttaatctcaagtaagctgggctaccacggtctctctc |
304 |
Q |
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|||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||||| ||||| |||||||| |
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| T |
25914985 |
gaaagaaatttactttgttgctgaatgggactaaatcaccaagagaattgacacttttaaaccctaatctcaaataagcagggctgccacgatctctctc |
25915084 |
T |
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| Q |
305 |
attaagctcatacacatgcatttcttgaactttttctg |
342 |
Q |
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||| | |||||| |||| | ||||||||||||||||| |
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| T |
25915085 |
attgatctcataaacatttaattcttgaactttttctg |
25915122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 25914842 - 25914904
Alignment:
| Q |
27 |
atgcaaataccagttgttattccaatacgtttttgtagatctcctgtgtataactgcataata |
89 |
Q |
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||||||||||||| |||||||||||| ||||||||||| || || || || |||||||||||| |
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| T |
25914842 |
atgcaaataccagctgttattccaatgcgtttttgtaggtcaccagtatacaactgcataata |
25914904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 16075474 - 16075399
Alignment:
| Q |
268 |
ttaatctcaagtaagctgggctaccacggtctctctcattaagctcatacacatgcatttcttgaactttttctgcaaa |
346 |
Q |
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||||||||||||||||| || ||||||||||||||| |||| |||||||||| || |||||||||||||||||| |
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| T |
16075474 |
ttaatctcaagtaagctaggataccacggtctctcttattattatcatacacat---ttaattgaactttttctgcaaa |
16075399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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