View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_12 (Length: 399)
Name: NF12111_low_12
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 39300150 - 39299804
Alignment:
| Q |
1 |
tcaagagagactcatgaacttggttcaaatgtgaagcagagtgatagggatcatcatcatgctgctgctaccaaccttggacacaaacaaggttttcagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
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| T |
39300150 |
tcaagagagactcatgaacttggttcaaatgtgaagcagagtgatagggatcatcatcatgctgctgctacgaaccttggtcacaagcaaggttttcagt |
39300051 |
T |
|
| Q |
101 |
ctcactctgatcaaaatgtgaaacagagtgagagggatcgtcatcatgctacaaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300050 |
ctcactctgatcaaaatgtgaaacagagtgagagggatcgtcatcatgctacaaatgtagttggacacagacaaggtgcagaaggcatgaaagaaagagg |
39299951 |
T |
|
| Q |
201 |
tgaaggtttgggagatattggtggaagaggannnnnnnnnnnnnnccatgaacttggttcaaactttcagtctcttcctgatcgtaacgagaatcaaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299950 |
tgaaggtttgggagatattggtggaagaggaagagaaagagagagccatgaacttggttcaaactttcagtctcttcctgatcgtaacgagaatcaaagt |
39299851 |
T |
|
| Q |
301 |
taccttgatcgtgcacatgttcgtgatagtgcaaatgtagcaggaaa |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299850 |
taccttgatcgtgcacatgttcgtgatagtgcaaatgtagcaggaaa |
39299804 |
T |
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