View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12111_low_13 (Length: 389)
Name: NF12111_low_13
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 45275164 - 45274784
Alignment:
| Q |
1 |
gactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275164 |
gactgcaaggacttgatgcaattcgctttggacagtcttgacctctcaaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctg |
45275065 |
T |
|
| Q |
101 |
atatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45275064 |
atatgaggaattggttgagtgcagtcatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaatt |
45274965 |
T |
|
| Q |
201 |
ccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
300 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45274964 |
ccatgttcagagtttggacagcgtacaaaagatcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
45274865 |
T |
|
| Q |
301 |
gatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgct |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
45274864 |
gatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctgct |
45274784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 45271631 - 45271254
Alignment:
| Q |
1 |
gactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctg |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||||||||||| |
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| T |
45271631 |
gactgcaaagacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattgaagctgttcatgaccaaactgctg |
45271532 |
T |
|
| Q |
101 |
atatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
45271531 |
atatgaggaattggttgagtgcagttatctcttacaaacaaggttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaatt |
45271432 |
T |
|
| Q |
201 |
ccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
45271431 |
ccatgttcagagtttgtacagcgtacaaaaggtcacagccgttgcccttgacattgtgactggtttgtctgacatcctccagcaattcaacttgaacttt |
45271332 |
T |
|
| Q |
301 |
gatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctct |
378 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
45271331 |
gatatcaaacctccttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctct |
45271254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 45283405 - 45283028
Alignment:
| Q |
1 |
gactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||||||| |||| |
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|
| T |
45283405 |
gactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaatcgctg |
45283306 |
T |
|
| Q |
101 |
atatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
45283305 |
atatgaggaattggttgagtgcggttatctcttacagacaagcttgtatggaaggatttgacgatgcaaatgatggtgagaagaagatcaaggagcaatt |
45283206 |
T |
|
| Q |
201 |
ccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45283205 |
ccatgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
45283106 |
T |
|
| Q |
301 |
gatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctct |
378 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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|
| T |
45283105 |
gatgtcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctct |
45283028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 45294793 - 45294413
Alignment:
| Q |
1 |
gactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| || ||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
45294793 |
gactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctg |
45294694 |
T |
|
| Q |
101 |
atatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||| |
|
|
| T |
45294693 |
atatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaatt |
45294594 |
T |
|
| Q |
201 |
ccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45294593 |
agacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
45294494 |
T |
|
| Q |
301 |
gatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgct |
381 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45294493 |
gatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgct |
45294413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 45303753 - 45303373
Alignment:
| Q |
1 |
gactgcaaggacttgatgcaattcgctttagacagtcttgacctctccaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| || ||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
45303753 |
gactgcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctg |
45303654 |
T |
|
| Q |
101 |
atatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttgacgatgcaaatgatggtgagaagaaaatcaaagagcaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| ||||||||||| ||||| |||||||| |
|
|
| T |
45303653 |
atatgaggaattggttgagtgcagttatctcttacagacaagcttgtatggaaggatttgacgatgaaaatgacggtgagaagaagatcaaggagcaatt |
45303554 |
T |
|
| Q |
201 |
ccatgttcagagtttggacagcgtacaaaaggtcaccgcggttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45303553 |
agacgttcagagtttggacagcgtacaaaaggttaccgctgttgcccttgacattgtgactggtttgtccgacatcctccagcaattcaacttgaagttt |
45303454 |
T |
|
| Q |
301 |
gatatcaaacctctttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggacacccttcatggatctctgct |
381 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45303453 |
gatatcaaacctgcttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgct |
45303373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 38588718 - 38588624
Alignment:
| Q |
67 |
aacaacattcaagctgttcatgaccaaactgctgatatgaggaattggttgagtgcagttatatcctacagacaagcctgtatggaaggatttga |
161 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| | ||||||||||||||||| ||||| || ||| |||| | || ||||| |||||||| |
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|
| T |
38588718 |
aacaacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgctgttatctcataccaacaatcatgcatggacggatttga |
38588624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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