View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12111_low_14 (Length: 383)

Name: NF12111_low_14
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12111_low_14
NF12111_low_14
[»] chr1 (4 HSPs)
chr1 (4-325)||(10011702-10012023)
chr1 (327-362)||(24638703-24638738)
chr1 (327-361)||(28234800-28234834)
chr1 (327-364)||(33690160-33690197)
[»] chr2 (7 HSPs)
chr2 (327-364)||(3988706-3988743)
chr2 (315-362)||(16106782-16106829)
chr2 (327-366)||(22315254-22315293)
chr2 (327-361)||(19881940-19881974)
chr2 (327-361)||(23293254-23293288)
chr2 (327-364)||(35305361-35305398)
chr2 (289-325)||(26449110-26449146)
[»] chr4 (4 HSPs)
chr4 (327-363)||(28359741-28359777)
chr4 (327-366)||(54822048-54822087)
chr4 (327-364)||(4414416-4414453)
chr4 (327-364)||(25232736-25232773)
[»] chr8 (6 HSPs)
chr8 (327-361)||(8014989-8015023)
chr8 (327-361)||(40485621-40485655)
chr8 (327-364)||(18656689-18656726)
chr8 (327-364)||(36833905-36833942)
chr8 (327-364)||(44056567-44056604)
chr8 (288-328)||(26955426-26955466)
[»] chr7 (3 HSPs)
chr7 (326-364)||(10198307-10198345)
chr7 (327-361)||(36099756-36099790)
chr7 (328-364)||(33628324-33628360)
[»] chr5 (2 HSPs)
chr5 (287-325)||(16352147-16352185)
chr5 (327-364)||(6273129-6273166)
[»] chr3 (4 HSPs)
chr3 (327-361)||(29025260-29025294)
chr3 (327-364)||(51537254-51537291)
chr3 (327-364)||(53351172-53351209)
chr3 (326-362)||(11412559-11412595)
[»] chr6 (1 HSPs)
chr6 (327-364)||(29419825-29419862)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 4 - 325
Target Start/End: Original strand, 10011702 - 10012023
Alignment:
Q  4 attattaattgtggtaagaaagcaatgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgagtgtttactgactcatga 103  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  10011702 attattaattgtggtaagaaagcaacgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgattgtttactgactcatgg 10011801  T
Q  104 gtagtaacatccatatataggcatagagtgcaagcaaatagtgtatctaggtgcatggaaaatataccgaaataaattatgagtgcgaaggcttagagtt 203  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  10011802 ttagtaacatccatatataggcatagagtgcaggcaaatagtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagtt 10011901  T
Q  204 ttgtcattccaagacacttcattcaattaattaaggagggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaa 303  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10011902 ttgtcattccaagatacttcattcaattaattaaggagggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaa 10012001  T
Q  304 ttagggtaagcatgtttgctag 325  Q
    ||||||||||||||||||||||    
T  10012002 ttagggtaagcatgtttgctag 10012023  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 362
Target Start/End: Original strand, 24638703 - 24638738
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggca 362  Q
    |||||||||||||||||||||||||| |||||||||    
T  24638703 atagttttaaaactcagctcggtcatcgactcggca 24638738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 28234800 - 28234834
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggc 361  Q
    ||||||||||||||| |||||||||||||||||||    
T  28234800 atagttttaaaactcggctcggtcattgactcggc 28234834  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 33690160 - 33690197
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  33690160 atagttttaaaactcggctcggtcatcgactcggcagg 33690197  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 3988706 - 3988743
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3988706 atagttttaaaactcggctcggtcattgactcggcagg 3988743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 16106829 - 16106782
Alignment:
Q  315 atgtttgctagaatagttttaaaactcagctcggtcattgactcggca 362  Q
    |||||||| || ||||||||||||||| |||||||||| |||||||||    
T  16106829 atgtttgcaagcatagttttaaaactcggctcggtcatcgactcggca 16106782  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 22315293 - 22315254
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcaggtg 366  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  22315293 atagttttaaaactcgtctcggtcattgactcggcaggtg 22315254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 19881940 - 19881974
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggc 361  Q
    ||||||||||||||| |||||||||||||||||||    
T  19881940 atagttttaaaactcggctcggtcattgactcggc 19881974  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 23293288 - 23293254
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggc 361  Q
    ||||||||||||||| |||||||||||||||||||    
T  23293288 atagttttaaaactcggctcggtcattgactcggc 23293254  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 35305398 - 35305361
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  35305398 atagttttaaaactcggctcggtcatcgactcggcagg 35305361  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 325
Target Start/End: Complemental strand, 26449146 - 26449110
Alignment:
Q  289 attagggttttggaattagggtaagcatgtttgctag 325  Q
    |||||||||| | ||||||||||||||||||||||||    
T  26449146 attagggtttggcaattagggtaagcatgtttgctag 26449110  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 363
Target Start/End: Complemental strand, 28359777 - 28359741
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcag 363  Q
    ||||||||||||||| |||||||||||||||||||||    
T  28359777 atagttttaaaactcggctcggtcattgactcggcag 28359741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 54822048 - 54822087
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcaggtg 366  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  54822048 atagttttaaaactcggctcggtcatcgactcggcaggtg 54822087  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 4414416 - 4414453
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  4414416 atagttttaaaactcggctcggtcatcgactcggcagg 4414453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 25232773 - 25232736
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  25232773 atagttttaaaactcggctcggtcatcgactcggcagg 25232736  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 8015023 - 8014989
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggc 361  Q
    ||||||||||||||| |||||||||||||||||||    
T  8015023 atagttttaaaactcggctcggtcattgactcggc 8014989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 40485655 - 40485621
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggc 361  Q
    ||||||||||||||| |||||||||||||||||||    
T  40485655 atagttttaaaactcggctcggtcattgactcggc 40485621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 18656726 - 18656689
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  18656726 atagttttaaaactcggctcggtcatcgactcggcagg 18656689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 36833905 - 36833942
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  36833905 atagttttaaaactcggctcggtcatcgactcggcagg 36833942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 44056604 - 44056567
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  44056604 atagttttaaaactcagctcgatcatcgactcggcagg 44056567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 26955466 - 26955426
Alignment:
Q  288 gattagggttttggaattagggtaagcatgtttgctagaat 328  Q
    ||||||||||| | ||||||||||| |||||||||||||||    
T  26955466 gattagggtttggcaattagggtaaacatgtttgctagaat 26955426  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 364
Target Start/End: Original strand, 10198307 - 10198345
Alignment:
Q  326 aatagttttaaaactcagctcggtcattgactcggcagg 364  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  10198307 aatagttttaaaactcggctcggtcatcgactcggcagg 10198345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 36099790 - 36099756
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggc 361  Q
    ||||||||||||||| |||||||||||||||||||    
T  36099790 atagttttaaaactcggctcggtcattgactcggc 36099756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 364
Target Start/End: Complemental strand, 33628360 - 33628324
Alignment:
Q  328 tagttttaaaactcagctcggtcattgactcggcagg 364  Q
    |||||||||||||| |||||| |||||||||||||||    
T  33628360 tagttttaaaactcggctcggacattgactcggcagg 33628324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 16352147 - 16352185
Alignment:
Q  287 ggattagggttttggaattagggtaagcatgtttgctag 325  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  16352147 ggattagggtttggcaattagggtaagcatgtttgctag 16352185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 6273129 - 6273166
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  6273129 atagttttaaaactcggctcggtcatcgactcggcagg 6273166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 327 - 361
Target Start/End: Original strand, 29025260 - 29025294
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggc 361  Q
    |||||||||||||||||||||||||| ||||||||    
T  29025260 atagttttaaaactcagctcggtcatcgactcggc 29025294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 51537291 - 51537254
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  51537291 atagttttaaaactcggctcggtcatcgactcggcagg 51537254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 53351172 - 53351209
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  53351172 atagttttaaaactcggctcggtcatcgactcggcagg 53351209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 362
Target Start/End: Complemental strand, 11412595 - 11412559
Alignment:
Q  326 aatagttttaaaactcagctcggtcattgactcggca 362  Q
    |||||||||||||||| |||||||||| |||||||||    
T  11412595 aatagttttaaaactcggctcggtcatcgactcggca 11412559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 364
Target Start/End: Complemental strand, 29419862 - 29419825
Alignment:
Q  327 atagttttaaaactcagctcggtcattgactcggcagg 364  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  29419862 atagttttaaaactcggctcggtcatcgactcggcagg 29419825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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