View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_15 (Length: 376)
Name: NF12111_low_15
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 232 - 338
Target Start/End: Complemental strand, 34492575 - 34492469
Alignment:
| Q |
232 |
ttgtttatttttcactccatttccatattagttcgtggtataagcaacaagattgattcaagcagcaggatcaacattattccagaataattgattcaca |
331 |
Q |
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| T |
34492575 |
ttgtttatttttcactccgtttccatattagttcgtggtataagcaacaagcttgattcaagcagcaggatcgacattattccagaataattgattcaca |
34492476 |
T |
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| Q |
332 |
aaatgga |
338 |
Q |
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| T |
34492475 |
aaatgga |
34492469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 126 - 323
Target Start/End: Complemental strand, 34482507 - 34482298
Alignment:
| Q |
126 |
aaacagggaagcacataacatgcagaagaatttccattttaatcttatggtaaatatttatttgaagctgtaaatctaaaattctgagttttaccaccta |
225 |
Q |
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||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||| | || ||| |
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| T |
34482507 |
aaacagggaagcatagaacatggagaagaatttccatttaaatcttatggtaaatatttatttg-agctgtgtatctaaaattgtgagttctttcagcta |
34482409 |
T |
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| Q |
226 |
agcaaattgtttatttttcactc---catttccatattagttcgtg-gta---------taagcaacaagattgattcaagcagcaggatcaacattatt |
312 |
Q |
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||||||||||||||||||||||| | |||||||||||| ||| ||| |||| |||||| |||||||||||||||||||| ||||||| |
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| T |
34482408 |
agcaaattgtttatttttcactctgtgagatccatattagttagtgtgtatactagtactaagtaacaagcttgattcaagcagcaggatcggcattatt |
34482309 |
T |
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| Q |
313 |
ccagaataatt |
323 |
Q |
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| T |
34482308 |
ccagaataatt |
34482298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 34482287 - 34482249
Alignment:
| Q |
320 |
aattgattcacaaaatggaaaagaaatttataatatatg |
358 |
Q |
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| T |
34482287 |
aattgattcacaaaatggaaaagaaattaataatatatg |
34482249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 34493604 - 34493566
Alignment:
| Q |
320 |
aattgattcacaaaatggaaaagaaatttataatatatg |
358 |
Q |
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|||||||| ||||||||||||||||| |||||||||||| |
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| T |
34493604 |
aattgattgacaaaatggaaaagaaaattataatatatg |
34493566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 317
Target Start/End: Complemental strand, 34493665 - 34493620
Alignment:
| Q |
272 |
taagcaacaagattgattcaagcagcaggatcaacattattccaga |
317 |
Q |
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|||| |||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
34493665 |
taagtaacaagcttgactcaagcagcaggatcgacattattccaga |
34493620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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