View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_19 (Length: 331)
Name: NF12111_low_19
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 40756403 - 40756705
Alignment:
| Q |
12 |
agaaggttggttgaggacaggtgatcttggttatattgatgagaatggaattgtctacatagtcgaacgaataaaggagctaatcaagcacaaagggtat |
111 |
Q |
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| T |
40756403 |
agaaggttggttgaggacaggtgatcttggttatattgatgagaatggaattgtctacatagtcgaacgaataaaggagctaatcaagcacaaagggtat |
40756502 |
T |
|
| Q |
112 |
caggtactcaaactcataaatagtttaagtttcaatggtgaagttttgttgcacttgaagttaaattagaatatcagtaaattcctttagttctaaggta |
211 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40756503 |
caggtactcaaattcataaatagtttaagtttcaatagtgaagttttgttgcacttgaagttaaattagaatatcagtaaattcctttagttctaaggta |
40756602 |
T |
|
| Q |
212 |
tcaaattgagtttggaacggttttagttttcattaatacatatgtggattgcttgtgtcaggtagctcctgcagaactggaatctgtgctgctaagtcat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40756603 |
tcaaattgagtttggaacggttttagttttcattaatacatatgtggattgcttgtgtcaggtagctcctgcagaactggaatctgtgctgctaagtcat |
40756702 |
T |
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| Q |
312 |
ccc |
314 |
Q |
| |
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||| |
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| T |
40756703 |
ccc |
40756705 |
T |
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