View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_20 (Length: 316)
Name: NF12111_low_20
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_20 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 316
Target Start/End: Original strand, 44975538 - 44975844
Alignment:
| Q |
12 |
agagagggctccatgagggacagagatggaccaatgtgtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaag |
111 |
Q |
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| T |
44975538 |
agagagggctccatgagggacagagatggaccaatgtgtactttttgattgggttctttgttttttaccgtgtgctttgtttcttggttttacttagaag |
44975637 |
T |
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| Q |
112 |
ggtttcaagatccaaaacttgaaggcctattggtgaaaaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgatctggtt |
211 |
Q |
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| T |
44975638 |
ggtttcaagatccaaaacttgaaggcctattggtgaaaaggataagcatataattatgaattttcttcaattctgatccttacttttgtatgaactggtt |
44975737 |
T |
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| Q |
212 |
ttgttatttcatttgattttctataaagtgtataaatatcatcatgatctgaaatacatgcatgcagccacaaac--aaagtttgtttcaaagtgagaaa |
309 |
Q |
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| T |
44975738 |
ttgttatttcatttgattttctataaagtgtataaatatcatcatgatctgaaatacatgcatgcggccataaacataaagtttgtttcaaagttagaaa |
44975837 |
T |
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| Q |
310 |
gttgact |
316 |
Q |
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| T |
44975838 |
gttgact |
44975844 |
T |
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