View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12111_low_21 (Length: 298)

Name: NF12111_low_21
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12111_low_21
NF12111_low_21
[»] chr8 (13 HSPs)
chr8 (207-298)||(17973616-17973707)
chr8 (212-298)||(25579740-25579826)
chr8 (212-298)||(39837490-39837576)
chr8 (212-298)||(17664568-17664654)
chr8 (212-298)||(30938333-30938419)
chr8 (220-298)||(39845541-39845619)
chr8 (217-298)||(4839715-4839796)
chr8 (212-298)||(1407001-1407087)
chr8 (212-298)||(17683724-17683810)
chr8 (221-298)||(26873541-26873618)
chr8 (221-298)||(26875991-26876068)
chr8 (223-279)||(23090611-23090667)
chr8 (223-279)||(25700273-25700329)
[»] scaffold0002 (1 HSPs)
scaffold0002 (212-298)||(121279-121365)
[»] chr6 (17 HSPs)
chr6 (212-298)||(25991901-25991987)
chr6 (212-297)||(25550347-25550432)
chr6 (207-298)||(13825754-13825845)
chr6 (212-298)||(30824457-30824543)
chr6 (221-298)||(23925386-23925463)
chr6 (212-298)||(5004112-5004198)
chr6 (212-298)||(25506469-25506555)
chr6 (212-298)||(33298136-33298221)
chr6 (194-298)||(5994750-5994855)
chr6 (218-297)||(35091610-35091689)
chr6 (212-298)||(11279888-11279974)
chr6 (220-298)||(15391547-15391625)
chr6 (222-290)||(26526640-26526708)
chr6 (14-81)||(20532403-20532470)
chr6 (226-279)||(15140726-15140779)
chr6 (226-279)||(23985047-23985100)
chr6 (226-279)||(28127457-28127510)
[»] chr4 (10 HSPs)
chr4 (212-298)||(12996527-12996613)
chr4 (212-298)||(27343619-27343705)
chr4 (212-298)||(4523608-4523694)
chr4 (212-298)||(8094210-8094296)
chr4 (212-298)||(8103016-8103102)
chr4 (221-298)||(52295655-52295732)
chr4 (212-298)||(21532233-21532318)
chr4 (245-294)||(12402907-12402956)
chr4 (226-298)||(19772241-19772313)
chr4 (226-279)||(19647352-19647405)
[»] scaffold0016 (1 HSPs)
scaffold0016 (194-295)||(23519-23620)
[»] chr2 (21 HSPs)
chr2 (194-298)||(35037907-35038011)
chr2 (212-298)||(14582976-14583062)
chr2 (212-298)||(15944485-15944571)
chr2 (212-298)||(15953000-15953086)
chr2 (212-298)||(35138644-35138730)
chr2 (212-298)||(35146980-35147066)
chr2 (212-298)||(38168285-38168371)
chr2 (212-298)||(41233772-41233858)
chr2 (212-298)||(42565857-42565943)
chr2 (212-298)||(42574481-42574567)
chr2 (212-295)||(20621572-20621655)
chr2 (247-297)||(17687361-17687411)
chr2 (221-298)||(20372251-20372327)
chr2 (223-295)||(18989312-18989384)
chr2 (238-298)||(25483652-25483712)
chr2 (238-298)||(25491258-25491318)
chr2 (254-298)||(44372756-44372800)
chr2 (254-298)||(44388667-44388711)
chr2 (224-278)||(35303808-35303862)
chr2 (226-279)||(27683381-27683434)
chr2 (49-81)||(20372078-20372110)
[»] chr7 (9 HSPs)
chr7 (212-298)||(10439988-10440074)
chr7 (218-298)||(18304326-18304406)
chr7 (212-298)||(4952325-4952411)
chr7 (212-298)||(13831551-13831637)
chr7 (212-298)||(13839582-13839668)
chr7 (212-298)||(12978506-12978592)
chr7 (223-278)||(1955691-1955746)
chr7 (226-279)||(20114066-20114119)
chr7 (226-279)||(38247996-38248049)
[»] chr5 (26 HSPs)
chr5 (212-298)||(20372841-20372927)
chr5 (212-298)||(20398563-20398649)
chr5 (194-298)||(23349986-23350090)
chr5 (212-298)||(29186206-29186292)
chr5 (212-298)||(43597974-43598060)
chr5 (212-298)||(43603466-43603552)
chr5 (212-298)||(43608958-43609044)
chr5 (212-298)||(1728087-1728173)
chr5 (212-298)||(24956774-24956860)
chr5 (212-298)||(24965237-24965323)
chr5 (212-298)||(28843991-28844077)
chr5 (212-298)||(28852601-28852687)
chr5 (217-298)||(31410941-31411022)
chr5 (222-298)||(31421840-31421916)
chr5 (224-270)||(23028007-23028053)
chr5 (225-271)||(23037923-23037969)
chr5 (226-279)||(21988620-21988673)
chr5 (226-279)||(21997264-21997317)
chr5 (226-279)||(23606368-23606421)
chr5 (226-279)||(23635076-23635129)
chr5 (226-279)||(23829022-23829075)
chr5 (226-279)||(23837763-23837816)
chr5 (226-279)||(31550458-31550511)
chr5 (238-298)||(19223606-19223666)
chr5 (223-279)||(21852579-21852635)
chr5 (223-279)||(21869103-21869159)
[»] chr3 (20 HSPs)
chr3 (212-298)||(50824403-50824489)
chr3 (212-298)||(50851371-50851457)
chr3 (194-297)||(14538514-14538618)
chr3 (221-297)||(27341272-27341348)
chr3 (212-298)||(8154572-8154658)
chr3 (212-298)||(41006607-41006693)
chr3 (212-298)||(41015387-41015473)
chr3 (207-298)||(9525357-9525448)
chr3 (207-298)||(9555031-9555122)
chr3 (223-298)||(43470492-43470567)
chr3 (212-298)||(2211290-2211376)
chr3 (224-298)||(17933706-17933780)
chr3 (212-298)||(28470146-28470231)
chr3 (226-279)||(13272670-13272723)
chr3 (226-279)||(4505979-4506032)
chr3 (223-264)||(16288692-16288733)
chr3 (226-279)||(17657630-17657683)
chr3 (226-279)||(27976552-27976605)
chr3 (224-280)||(1477758-1477814)
chr3 (226-270)||(17618130-17618174)
[»] scaffold0156 (1 HSPs)
scaffold0156 (207-298)||(35279-35370)
[»] scaffold0111 (1 HSPs)
scaffold0111 (212-298)||(33086-33172)
[»] scaffold0083 (1 HSPs)
scaffold0083 (221-298)||(15864-15941)
[»] scaffold0632 (1 HSPs)
scaffold0632 (221-297)||(4442-4518)
[»] chr1 (14 HSPs)
chr1 (212-298)||(3432818-3432904)
chr1 (194-297)||(41746602-41746706)
chr1 (212-298)||(31540005-31540091)
chr1 (212-298)||(31548574-31548660)
chr1 (194-298)||(32137664-32137768)
chr1 (212-298)||(35103992-35104078)
chr1 (224-273)||(8241438-8241487)
chr1 (48-86)||(28457826-28457864)
chr1 (226-298)||(8579341-8579413)
chr1 (224-298)||(29221429-29221502)
chr1 (226-279)||(12465698-12465751)
chr1 (232-273)||(28457632-28457673)
chr1 (49-81)||(23950396-23950428)
chr1 (49-81)||(28993305-28993337)
[»] scaffold0497 (1 HSPs)
scaffold0497 (223-298)||(11044-11119)
[»] scaffold0173 (1 HSPs)
scaffold0173 (194-298)||(839-943)
[»] scaffold0209 (1 HSPs)
scaffold0209 (212-298)||(12-98)
[»] scaffold0290 (1 HSPs)
scaffold0290 (223-295)||(15760-15832)
[»] scaffold0222 (1 HSPs)
scaffold0222 (224-294)||(20422-20492)
[»] scaffold0170 (1 HSPs)
scaffold0170 (223-294)||(7129-7200)
[»] scaffold0315 (1 HSPs)
scaffold0315 (223-279)||(10595-10651)
[»] scaffold0039 (1 HSPs)
scaffold0039 (258-298)||(40807-40847)
[»] scaffold0455 (1 HSPs)
scaffold0455 (226-279)||(6056-6109)
[»] scaffold0047 (1 HSPs)
scaffold0047 (226-279)||(59736-59789)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 17973707 - 17973616
Alignment:
Q  207 gcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  17973707 gcccgactcggaataaaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 17973616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 25579740 - 25579826
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||| ||||||||||||||||||||||||    
T  25579740 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 25579826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 39837490 - 39837576
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| |  | |||||||||||||||||| ||||||||||||||||||||||||    
T  39837490 actcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 39837576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 17664568 - 17664654
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| | ||| |  | ||||||||||||||||||||||||||||||||| |||||||||    
T  17664568 actcggaataaaaaatgaggtacttcaaagtaacttctttgtcaaaatttcgtctgaaacgatgaaaattcccgactctaaaaatac 17664654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 30938419 - 30938333
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  30938419 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 30938333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 39845541 - 39845619
Alignment:
Q  220 taaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||||||| |||||||||||| ||||| |  | |||||||||||||||||| ||||||||||||||||||||||||    
T  39845541 taaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 39845619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 4839715 - 4839796
Alignment:
Q  217 gaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| ||||||||| |||||||||||| | ||| |  |||||||||||||||||||| ||||||||||||||||||||||||    
T  4839715 gaatcaaaaatgaggtacttcaaagtaacttctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 4839796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 1407001 - 1407087
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  |||||||| | |||||||||||||    
T  1407001 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcacaactttaaaaatac 1407087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 17683724 - 17683810
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| | ||| |  | |||||||||||||||||| |||||||||||||| |||||||||    
T  17683724 actcggaataaaaaatgaggtacttcaaagtaacttctttgtcaaaatttcgtctgaaacgacgaaaattcccgactctaaaaatac 17683810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 26873541 - 26873618
Alignment:
Q  221 aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||| || ||||| |||||| ||||| |  |||||||||||||||||||| ||||||| ||||| ||| ||||||    
T  26873541 aaaaaataaggtactttaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaatttccgacattacaaatac 26873618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 26875991 - 26876068
Alignment:
Q  221 aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||||||| || || |||||| ||||| |  ||||||||||||||||||||  |||||| ||||| ||||||||||    
T  26875991 aaaaaatgaggtattttaaagtaacctctttgtcgaaatttcgtctgaaacgacaaaaatttccgacattaaaaatac 26876068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 23090667 - 23090611
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    |||||||| ||||||||||||||||||||  | ||||||||||| ||| ||| ||||    
T  23090667 aaaatgaggtacttcaaagtatcctctctgtccaaatttcgtctaaaatgattaaaa 23090611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 25700329 - 25700273
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    |||||||| |||||||||||| |||| || |||||||||||| ||||| ||| ||||    
T  25700329 aaaatgaggtacttcaaagtaacctcccttccgaaatttcgtttgaaatgattaaaa 25700273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 121365 - 121279
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  121365 actcggaatcaaaaatgatttacttcaaagtaacctctctaccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 121279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 25991987 - 25991901
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  25991987 actctgaataaaaaatgaggtacttcaaagtaacctctctaccgaaatttcttctgaaacgacgaaaattcccgactttaaaaatac 25991901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 25550432 - 25550347
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaata 297  Q
    |||| |||||||||||||| |||||||||||| ||||||| || ||||||||| |||||||| |||||||||||||||||||||||    
T  25550432 actcggaataaaaaatgaggtacttcaaagtaacctctctgccaaaatttcgtttgaaacgacgaaaattcccgactttaaaaata 25550347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 13825845 - 13825754
Alignment:
Q  207 gcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| |||| ||||||||| |||||||||||| |||||||  |||||||||||||||||||| ||||||||| ||||||||||||||    
T  13825845 gcccgactcggaatcaaaaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacgaaaattcctgactttaaaaatac 13825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 30824457 - 30824543
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||| | || |||||||||||||||||| ||||||||||||||||||||||||    
T  30824457 actcggaatcaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 30824543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 23925463 - 23925386
Alignment:
Q  221 aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||||||| |||||||||||| | |||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  23925463 aaaaaatgaggtacttcaaagtaacatctctaccgaaatttcgtcaaaaatgatgaaaattcccgactttaaaaatac 23925386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 5004198 - 5004112
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  5004198 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 5004112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 25506469 - 25506555
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| || || |||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||||||||    
T  25506469 actcggaatcaaaaatgaggtattttaaagtaacctctctgccgaaatttcgtctaaaacgacgaaaattcccgactttaaaaatac 25506555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 33298221 - 33298136
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| | ||| |  |||||||||||||||||||| ||||||||||||||||||||||||    
T  33298221 actcggaataaaaaatgaggtacttcaaagtaac-tctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 33298136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 5994855 - 5994750
Alignment:
Q  194 aagagggaacagagcccaactccgaat-aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaa 292  Q
    ||||||||| || |||| |||| |||| |||||||||| |||||||||||| ||||| | || |||||| ||||||||||| ||||||| ||||||||||    
T  5994855 aagagggaagagggcccgactcggaatcaaaaaatgaggtacttcaaagtaacctctttgccaaaattttgtctgaaacgacgaaaatttccgactttaa 5994756  T
Q  293 aaatac 298  Q
    ||||||    
T  5994755 aaatac 5994750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 297
Target Start/End: Original strand, 35091610 - 35091689
Alignment:
Q  218 aataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaata 297  Q
    ||||||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||| |||||||||||||||    
T  35091610 aataaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaatttccgactttaaaaata 35091689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 11279974 - 11279888
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  |||||||| | |||||||||||||    
T  11279974 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatac 11279888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 220 - 298
Target Start/End: Original strand, 15391547 - 15391625
Alignment:
Q  220 taaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||||||| |||||||||||| ||||| |  |||||||||||||||||||| ||||||||| | ||||||||||||    
T  15391547 taaaaaatgaggtacttcaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaattcctggctttaaaaatac 15391625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 26526640 - 26526708
Alignment:
Q  222 aaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgacttt 290  Q
    ||||||||| || ||||||||| || |||| |||| |||||||||||||||| ||||||||||||||||    
T  26526640 aaaaatgaggtaattcaaagtaaccactctgccgatatttcgtctgaaacgacgaaaattcccgacttt 26526708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 20532403 - 20532470
Alignment:
Q  14 tgtggcgtacggagaagaaatgnnnnnnnngaaattggacccttgctgaaattttcggactcattgac 81  Q
    ||||||||||||||||||||||         ||| |||||||||||||||||||||||||| ||||||    
T  20532403 tgtggcgtacggagaagaaatgaaaaaaagaaaaatggacccttgctgaaattttcggacttattgac 20532470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 15140779 - 15140726
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  15140779 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 15140726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 23985047 - 23985100
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  23985047 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 23985100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 28127457 - 28127510
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  28127457 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 28127510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 12996613 - 12996527
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  12996613 actcggaataaaaaatgaggtacttcaaagtaacctctctaccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatac 12996527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 27343619 - 27343705
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| |||||||   ||||||||||||||||||| ||||||||||||||||||||||||    
T  27343619 actcggaataaaaaatgaggtacttcaaagtaacctctctgttgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 27343705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 4523608 - 4523694
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| |  | |||||||||||||||||| ||||||||||||||||||||||||    
T  4523608 actcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 4523694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 8094210 - 8094296
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||| | || |||||||||||||||||| ||||||||||||||||||||||||    
T  8094210 actcggaatcaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 8094296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 8103016 - 8103102
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||| | || |||||||||||||||||| ||||||||||||||||||||||||    
T  8103016 actcggaatcaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 8103102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 52295732 - 52295655
Alignment:
Q  221 aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||||||| ||||||||||||  |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  52295732 aaaaaatgaggtacttcaaagtaatctctctgccgaaattttgtctgaaacgacgaaaattcccgactttaaaaatac 52295655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 21532233 - 21532318
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| ||||||||||||  || | |  |||||||||||||||||||| ||||||| ||||||||||||||||    
T  21532233 actcagaataaaaaatgaggtacttcaaagtaatcttt-tgtcgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatac 21532318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 12402956 - 12402907
Alignment:
Q  245 cctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaa 294  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  12402956 cctctctgccgaaatttcgtctgaaacgacgaaaattcctgactttaaaa 12402907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 19772313 - 19772241
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||  | ||||||| |||||||    
T  19772313 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaaaacgcgacttttaaaatac 19772241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 19647352 - 19647405
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  19647352 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 19647405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 295
Target Start/End: Complemental strand, 23620 - 23519
Alignment:
Q  194 aagagggaacagagcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaa 293  Q
    ||||||||| || |||| |||| |||| ||||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  23620 aagagggaagagggcccgactcggaatcaaaaatgaggtacttcaaagtaacctctctaccgaaatttcgtcagaaatgatgaaaattcccgactttaaa 23521  T
Q  294 aa 295  Q
    ||    
T  23520 aa 23519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 35038011 - 35037907
Alignment:
Q  194 aagagggaacagagcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaa 293  Q
    ||||||||| || |||  |||| |||||||||||||| || ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  35038011 aagagggaagagggcctgactcggaataaaaaatgaggtatttcaaagtaacctctctatcgaaatttcgtctgaaacgacgaaaattcccgactttaaa 35037912  T
Q  294 aatac 298  Q
    |||||    
T  35037911 aatac 35037907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 14583062 - 14582976
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  14583062 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 14582976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 15944485 - 15944571
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  15944485 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 15944571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 15953000 - 15953086
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  15953000 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 15953086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 35138730 - 35138644
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  35138730 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 35138644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 35147066 - 35146980
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  35147066 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 35146980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 38168285 - 38168371
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  38168285 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 38168371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 41233772 - 41233858
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  41233772 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 41233858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 42565857 - 42565943
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  |||||||| | |||||||||||||    
T  42565857 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatac 42565943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 42574481 - 42574567
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  |||||||| | |||||||||||||    
T  42574481 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatac 42574567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 295
Target Start/End: Complemental strand, 20621655 - 20621572
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaa 295  Q
    |||| |||||||||||||| |||||||||||| | ||| |  |||||||| ||||||||||| ||||||||||||||| |||||    
T  20621655 actcagaataaaaaatgaggtacttcaaagtaacatctttgtcgaaattttgtctgaaacgacgaaaattcccgacttcaaaaa 20621572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 17687361 - 17687411
Alignment:
Q  247 tctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaata 297  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  17687361 tctctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaata 17687411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 20372251 - 20372327
Alignment:
Q  221 aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||||||| |||||||||||| ||| | |  |||||||||||||||||||| ||||||| ||||||||||||||||    
T  20372251 aaaaaatgaggtacttcaaagtaaccttt-tgtcgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatac 20372327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 18989312 - 18989384
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaa 295  Q
    |||||||| ||||| |||||| ||||||||||| ||||||||||||  |||  |||||||||| |||||||||    
T  18989312 aaaatgaggtacttgaaagtaacctctctaccgtaatttcgtctgatgcgacaaaaattcccggctttaaaaa 18989384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 25483712 - 25483652
Alignment:
Q  238 aaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||| |||||||  ||| |||||||||||||||| |||||||| |||||||||||||||    
T  25483712 aaagtaacctctctgtcgagatttcgtctgaaacgacgaaaattctcgactttaaaaatac 25483652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 25491318 - 25491258
Alignment:
Q  238 aaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||| |||||||  ||| |||||||||||||||| |||||||| |||||||||||||||    
T  25491318 aaagtaacctctctgtcgagatttcgtctgaaacgacgaaaattctcgactttaaaaatac 25491258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 44372800 - 44372756
Alignment:
Q  254 cgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  44372800 cgaaatttcgtcttaaacgacgaaaattcccgactttaaaaatac 44372756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 44388711 - 44388667
Alignment:
Q  254 cgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||    
T  44388711 cgaaatttcgtcttaaacgacgaaaattcccgactttaaaaatac 44388667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 35303862 - 35303808
Alignment:
Q  224 aaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaa 278  Q
    ||||||| ||||||||| || ||||||| ||||||||||||||||||||| ||||    
T  35303862 aaatgaggtacttcaaattaacctctctgccgaaatttcgtctgaaacgacgaaa 35303808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 27683381 - 27683434
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  27683381 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 27683434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 20372078 - 20372110
Alignment:
Q  49 tggacccttgctgaaattttcggactcattgac 81  Q
    |||||||||||||||||||||||||| ||||||    
T  20372078 tggacccttgctgaaattttcggacttattgac 20372110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 10440074 - 10439988
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  10440074 actcggaataaaaaatgaggtactttaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 10439988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 18304326 - 18304406
Alignment:
Q  218 aataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||||||||| |||||||||||| ||||| | || |||||||||||||||||| ||||||||||||||||||||||||    
T  18304326 aataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 18304406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 4952325 - 4952411
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||| ||||||| ||||||||||||||||    
T  4952325 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacgacgaaaatttccgactttaaaaatac 4952411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 13831637 - 13831551
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| |  | |||||||||||||||||| ||||||||||||||||||||||||    
T  13831637 actcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 13831551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 13839668 - 13839582
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| |  | |||||||||||||||||| ||||||||||||||||||||||||    
T  13839668 actcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 13839582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 12978592 - 12978506
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  12978592 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 12978506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 1955691 - 1955746
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaa 278  Q
    |||||||| | |||||||||| ||||||| ||||||||| ||||||||||| ||||    
T  1955691 aaaatgaggtgcttcaaagtaacctctctgccgaaattttgtctgaaacgacgaaa 1955746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 20114066 - 20114119
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  20114066 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 20114119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 38248049 - 38247996
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  38248049 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 38247996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 20372841 - 20372927
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| |||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  20372841 actcggaataaaaaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 20372927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 20398563 - 20398649
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| |||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  20398563 actcggaataaaaaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 20398649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 23349986 - 23350090
Alignment:
Q  194 aagagggaacagagcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaa 293  Q
    ||||| ||| || |||| |||| |||||||||||||| |||||||||||| ||||| | |||||||||||||||||| || || ||||||||||||||||    
T  23349986 aagagagaagagggcccgactcggaataaaaaatgaggtacttcaaagtaacctctttgccgaaatttcgtctgaaatgacgagaattcccgactttaaa 23350085  T
Q  294 aatac 298  Q
    |||||    
T  23350086 aatac 23350090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 29186206 - 29186292
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| ||||||||||||||  ||||||||||| ||||| |  |||||||||||||||||||| ||||||||||||||||||||||||    
T  29186206 actcggaataaaaaatgaggcacttcaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 29186292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 43597974 - 43598060
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  ||||||||||||||||||||||||    
T  43597974 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatac 43598060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 43603466 - 43603552
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  ||||||||||||||||||||||||    
T  43603466 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatac 43603552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 43608958 - 43609044
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  ||||||||||||||||||||||||    
T  43608958 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatac 43609044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 1728087 - 1728173
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| |  | |||||||||||||||||  ||||||||||||||||||||||||    
T  1728087 actcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacggcgaaaattcccgactttaaaaatac 1728173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 24956774 - 24956860
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  24956774 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 24956860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 24965237 - 24965323
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  24965237 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 24965323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 28844077 - 28843991
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  |||||||| | |||||||||||||    
T  28844077 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatac 28843991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 28852687 - 28852601
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  |||||||| | |||||||||||||    
T  28852687 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatac 28852601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 31411022 - 31410941
Alignment:
Q  217 gaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||||||||||| |||||||||||| ||||| |  ||||||||||| | |||||| |||||||||  |||||||||||||    
T  31411022 gaataaaaaatgaggtacttcaaagtaacctctttgtcgaaatttcgttttaaacgacgaaaattcctaactttaaaaatac 31410941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 298
Target Start/End: Complemental strand, 31421916 - 31421840
Alignment:
Q  222 aaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||||| |||||||||||| | ||| |  |||||||| ||||||||||| ||||||| ||||||| ||||||||    
T  31421916 aaaaatgaggtacttcaaagtaacatctttgtcgaaattttgtctgaaacgacgaaaatttccgacttcaaaaatac 31421840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 23028007 - 23028053
Alignment:
Q  224 aaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaa 270  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||||||    
T  23028007 aaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaa 23028053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 23037969 - 23037923
Alignment:
Q  225 aatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaac 271  Q
    |||||| |||||||||||| ||||||| |||||||||||||||||||    
T  23037969 aatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaac 23037923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 21988620 - 21988673
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  21988620 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 21988673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 21997264 - 21997317
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  21997264 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 21997317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 23606368 - 23606421
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  23606368 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 23606421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 23635129 - 23635076
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  23635129 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 23635076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 23829022 - 23829075
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  23829022 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 23829075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 23837763 - 23837816
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  23837763 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 23837816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 31550458 - 31550511
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| |||||||||||||| ||||| ||||||||| |||||||| ||| ||||    
T  31550458 atgaggtacttcaaagtatcatctctgccgaaattttgtctgaaatgattaaaa 31550511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 19223666 - 19223606
Alignment:
Q  238 aaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||| |||||||  ||| ||||| |||||||||| || ||||| |||||||||||||||    
T  19223666 aaagtaacctctctgtcgagatttcatctgaaacgacgacaattctcgactttaaaaatac 19223606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 21852579 - 21852635
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    |||||||| |||||||||||| |||| || |||||||||||| ||||| ||| ||||    
T  21852579 aaaatgaggtacttcaaagtaacctccctgccgaaatttcgtttgaaatgattaaaa 21852635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 21869103 - 21869159
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    |||||||| |||||||||||| |||| || |||||||||||| ||||| ||| ||||    
T  21869103 aaaatgaggtacttcaaagtaacctccctgccgaaatttcgtttgaaatgattaaaa 21869159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 50824489 - 50824403
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  50824489 actcggaataaaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatac 50824403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 50851371 - 50851457
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  50851371 actcggaataaaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatac 50851457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 14538514 - 14538618
Alignment:
Q  194 aagagggaacagagcccaactccgaataaaaaatgagttacttcaaagtatcctctcta-ccgaaatttcgtctgaaacgatgaaaattcccgactttaa 292  Q
    ||||| ||| || |||| |||| |||||||||||||| |||||||||||| ||||| |  ||||||||||||||||||||| ||||||||||||||||||    
T  14538514 aagagagaagagggcccgactcggaataaaaaatgaggtacttcaaagtaacctcttttgccgaaatttcgtctgaaacgacgaaaattcccgactttaa 14538613  T
Q  293 aaata 297  Q
    |||||    
T  14538614 aaata 14538618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 221 - 297
Target Start/End: Original strand, 27341272 - 27341348
Alignment:
Q  221 aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaata 297  Q
    |||||||||| |||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  27341272 aaaaaatgaggtacttcaaagtaacctttctgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaata 27341348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 8154572 - 8154658
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| |  | |||||||||||||||||| ||||||||||||||||||||||||    
T  8154572 actcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 8154658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 41006693 - 41006607
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  41006693 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 41006607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 41015473 - 41015387
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  41015473 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 41015387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 9525357 - 9525448
Alignment:
Q  207 gcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| |||||||||||||| || || |||||| ||| ||| |||||||||||||| |||| | ||||||||||||||||||||||||    
T  9525357 gcccgactcggaataaaaaatgaggtattttaaagtaacctttctgccgaaatttcgtctaaaacaacgaaaattcccgactttaaaaatac 9525448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 9555031 - 9555122
Alignment:
Q  207 gcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| |||||||||||||| || || |||||| ||| ||| |||||||||||||| |||| | ||||||||||||||||||||||||    
T  9555031 gcccgactcggaataaaaaatgaggtattttaaagtaacctttctgccgaaatttcgtctaaaacaacgaaaattcccgactttaaaaatac 9555122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 43470492 - 43470567
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||||||||  ||||||| || ||||||||||||    
T  43470492 aaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgaataaaattctcggctttaaaaatac 43470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 2211376 - 2211290
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| || || ||| || ||||| | |||||||||||||| |||||| ||||||||| ||||||||||||||    
T  2211376 actcggaataaaaaatgaggtattttaaaataccctctttgccgaaatttcgtcttaaacgacgaaaattcctgactttaaaaatac 2211290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 298
Target Start/End: Complemental strand, 17933780 - 17933706
Alignment:
Q  224 aaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||| |||||||||||| ||||||    ||||||||||||||||  | ||||||| ||||||||||||||||    
T  17933780 aaatgaggtacttcaaagtaacctctccgaagaaatttcgtctgaaataacgaaaatttccgactttaaaaatac 17933706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 28470146 - 28470231
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| ||||||| ||||  || | |  |||||||||||||||||||| ||||||| | ||||||||||||||    
T  28470146 actcagaataaaaaatgaggtacttcatagtaatcttt-tgtcgaaatttcgtctgaaacgacgaaaatttctgactttaaaaatac 28470231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 13272723 - 13272670
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||| ||| ||||    
T  13272723 atgaggtacttcaaagtatcctctctgccgaaattttgtctgaaatgattaaaa 13272670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 4505979 - 4506032
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  4505979 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 4506032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 16288733 - 16288692
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgt 264  Q
    |||||||| |||||||||||| ||||||| ||||||||||||    
T  16288733 aaaatgaggtacttcaaagtaacctctctgccgaaatttcgt 16288692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 17657683 - 17657630
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  17657683 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 17657630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 27976605 - 27976552
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  27976605 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 27976552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 1477814 - 1477758
Alignment:
Q  224 aaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaat 280  Q
    ||||||| |||||||||||| |||| || ||||||||| |||||||| ||| |||||    
T  1477814 aaatgaggtacttcaaagtaacctccctgccgaaattttgtctgaaatgataaaaat 1477758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 17618130 - 17618174
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaa 270  Q
    ||||| ||||||||||||||||| || ||||||||| ||||||||    
T  17618130 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaa 17618174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 35279 - 35370
Alignment:
Q  207 gcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| |||||||||||||| |||||||||||| ||||| |  |||||||||||||||||||| ||||||||||||||||||||||||    
T  35279 gcccgactcggaataaaaaatgaggtacttcaaagtaacctctttgtcgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 35370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 33172 - 33086
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| ||||| |||||| ||||| | ||||||||||||||||||||| ||||||||||||||||||||||||    
T  33172 actcggaataaaaaatgaggtactttaaagtaacctctttgccgaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 33086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 15941 - 15864
Alignment:
Q  221 aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  15941 aaaaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaaaaatac 15864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 4518 - 4442
Alignment:
Q  221 aaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaata 297  Q
    |||||||||| |||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  4518 aaaaaatgaggtacttcaaagtaacctctctgtcgaaatttcgtctgaaacgatgaaaattaccgactttaaaaata 4442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 3432818 - 3432904
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| |  | |||||||||||||||||| ||||||||||||||||||||||||    
T  3432818 actcggaataaaaaatgaggtacttcaaagtaacctctttgtcaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 3432904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 297
Target Start/End: Original strand, 41746602 - 41746706
Alignment:
Q  194 aagagggaacagagcccaactccgaataaaaaatgagttacttcaaagtatcctctcta-ccgaaatttcgtctgaaacgatgaaaattcccgactttaa 292  Q
    ||||| ||| || |||| |||| |||||||||||||| |||||||||||| ||||| |  ||||||||| ||||||||||| ||||||||||||||||||    
T  41746602 aagagagaagagggcccgactcggaataaaaaatgaggtacttcaaagtaacctcttttgccgaaattttgtctgaaacgacgaaaattcccgactttaa 41746701  T
Q  293 aaata 297  Q
    |||||    
T  41746702 aaata 41746706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 31540091 - 31540005
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  31540091 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 31540005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 31548660 - 31548574
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| ||||||||||||||||||||||||    
T  31548660 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccgactttaaaaatac 31548574  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 32137664 - 32137768
Alignment:
Q  194 aagagggaacagagcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaa 293  Q
    ||||| ||| || |||| |||| |||||||||||||| |||||||||||| | | | |   ||||||||||||||||||| |||||||||||||||||||    
T  32137664 aagagagaagagggcccgactcggaataaaaaatgaggtacttcaaagtaacttatttgttgaaatttcgtctgaaacgacgaaaattcccgactttaaa 32137763  T
Q  294 aatac 298  Q
    |||||    
T  32137764 aatac 32137768  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 35103992 - 35104078
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||| ||||||||| |||||||||||| ||||  | || |||||||||||||||||| |||||||||| |||||||||||||    
T  35103992 actcggaatcaaaaatgaggtacttcaaagtaacctccttgccaaaatttcgtctgaaacgacgaaaattcccaactttaaaaatac 35104078  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Original strand, 8241438 - 8241487
Alignment:
Q  224 aaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacga 273  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  8241438 aaatgaggtactttaaagtaacctctctaccgaaatttcgtctgaaacga 8241487  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 28457864 - 28457826
Alignment:
Q  48 ttggacccttgctgaaattttcggactcattgacattat 86  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  28457864 ttggacccctgctgaaattttcggactcattgacattat 28457826  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 8579413 - 8579341
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||  | ||||||| |||||||    
T  8579413 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaaaacgcgacttttaaaatac 8579341  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 298
Target Start/End: Original strand, 29221429 - 29221502
Alignment:
Q  224 aaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||| || |||||| || ||||||| ||||||||||||||||||    ||||||| ||||||||||||||||    
T  29221429 aaatgaggtatttcaaaata-cctctctgccgaaatttcgtctgaaatagcgaaaatttccgactttaaaaatac 29221502  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 12465698 - 12465751
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  12465698 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 12465751  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 28457673 - 28457632
Alignment:
Q  232 tacttcaaagtatcctctctaccgaaatttcgtctgaaacga 273  Q
    |||||||||||| |||||||  ||||||||||||||||||||    
T  28457673 tacttcaaagtaacctctctgtcgaaatttcgtctgaaacga 28457632  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 23950428 - 23950396
Alignment:
Q  49 tggacccttgctgaaattttcggactcattgac 81  Q
    |||||||||||||||||||||||||| ||||||    
T  23950428 tggacccttgctgaaattttcggacttattgac 23950396  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 28993305 - 28993337
Alignment:
Q  49 tggacccttgctgaaattttcggactcattgac 81  Q
    |||||||||||||||||||||||||| ||||||    
T  28993305 tggacccttgctgaaattttcggacttattgac 28993337  T

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Target: scaffold0497 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 298
Target Start/End: Complemental strand, 11119 - 11044
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||| |||||    
T  11119 aaaatgaggtacttcaaagtaacctctctgccgaaatttcgtctgaaacgacgaaaatttccgactttaacaatac 11044  T

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Target: scaffold0173 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 839 - 943
Alignment:
Q  194 aagagggaacagagcccaactccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaa 293  Q
    ||||| ||| || |||| |||| |||| ||||||||| || ||||||||| ||| ||| ||||||||||||||||||||| ||||||||||  |||||||    
T  839 aagagagaagagggcccgactcggaatcaaaaatgaggtatttcaaagtaacctttctgccgaaatttcgtctgaaacgacgaaaattcccagctttaaa 938  T
Q  294 aatac 298  Q
    |||||    
T  939 aatac 943  T

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Target: scaffold0209 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 12 - 98
Alignment:
Q  212 actccgaataaaaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    |||| |||||||||||||| |||||||||||| ||||| | || |||||||||||||||||  |||||||| | |||||||||||||    
T  12 actcggaataaaaaatgaggtacttcaaagtaacctctttgccaaaatttcgtctgaaacggcgaaaattctcaactttaaaaatac 98  T

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Target: scaffold0290 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 295
Target Start/End: Original strand, 15760 - 15832
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaaa 295  Q
    |||||||| |||||||||||| ||| ||||||| ||||||||||||| ||| ||||||||| | |||||||||    
T  15760 aaaatgaggtacttcaaagtaacctatctaccgtaatttcgtctgaagcgacgaaaattcctggctttaaaaa 15832  T

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Target: scaffold0222 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 20422 - 20492
Alignment:
Q  224 aaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaa 294  Q
    ||||||| |||| ||||||| ||||||| ||||||||||||||||||| | |||||||| || ||||||||    
T  20422 aaatgaggtactccaaagtaacctctctgccgaaatttcgtctgaaacaacgaaaattctcggctttaaaa 20492  T

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Target: scaffold0170 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 294
Target Start/End: Original strand, 7129 - 7200
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaattcccgactttaaaa 294  Q
    |||||||| |||||||||||| |||  || ||||||||||||||||||| | |||||||| || ||||||||    
T  7129 aaaatgaggtacttcaaagtaaccttcctcccgaaatttcgtctgaaacaacgaaaattctcggctttaaaa 7200  T

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Target: scaffold0315 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 10595 - 10651
Alignment:
Q  223 aaaatgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    |||||||| |||||||||||| ||||| | ||||||||||||||||| ||| |||||    
T  10595 aaaatgaggtacttcaaagtaacctctttgccgaaatttcgtctgaagcgacgaaaa 10651  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 40807 - 40847
Alignment:
Q  258 atttcgtctgaaacgatgaaaattcccgactttaaaaatac 298  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  40807 atttcgtctgaaacgatgaaaatgctcgactttaaaaatac 40847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 6056 - 6109
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  6056 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 6109  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 59789 - 59736
Alignment:
Q  226 atgagttacttcaaagtatcctctctaccgaaatttcgtctgaaacgatgaaaa 279  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||| ||| ||||    
T  59789 atgaggtacttcaaagtatcctccctgccgaaattttgtctgaaatgattaaaa 59736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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