View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12111_low_22 (Length: 296)
Name: NF12111_low_22
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_22 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0005 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 226585 - 226864
Alignment:
| Q |
1 |
ctcagccttagaaaataaaatgaactttagaagttaaatagagtatatgcagaatggaacagaaacacaacctgcaatttaggtattatctcttccattt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
226585 |
ctcaggcttagaaaataaaatgaactttagaagttaaatagagtatatgcagaatggaaaagaaacacaacctgcaatttaggtattatctcttccattt |
226684 |
T |
|
| Q |
101 |
ctcgctgagttttgttccgaaaatccggtccctctattgctaatccatcggtcaagataccgcattctctagctatagctttagcggtgtttatattatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
226685 |
ctcgctgagttttgttccgaaaatccggtccctctattgccaatccatcggtcaagataccgcattctctagctatagctttagcggtgtttatattatc |
226784 |
T |
|
| Q |
201 |
accggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttctttaactccaggcctcactggatcct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
226785 |
accggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttctttaactccaggcctcactggatcct |
226864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14590793 - 14590514
Alignment:
| Q |
1 |
ctcagccttagaaaataaaatgaactttagaagttaaatagagtatatgcagaatggaacagaaacacaacctgcaatttaggtattatctcttccattt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14590793 |
ctcaggcttagaaaataaaatgaactttagaagttaaatagagtatatgcagaatggaaaagaaacacaacctgcaatttaggtattatctcttccattt |
14590694 |
T |
|
| Q |
101 |
ctcgctgagttttgttccgaaaatccggtccctctattgctaatccatcggtcaagataccgcattctctagctatagctttagcggtgtttatattatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14590693 |
ctcgctgagttttgttccgaaaatccggtccctctattgccaatccatcggtcaagataccgcattctctagctatagctttagcggtgtttatattatc |
14590594 |
T |
|
| Q |
201 |
accggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttctttaactccaggcctcactggatcct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14590593 |
accggtcaccattctaacagtaattccagcatccaaacaagtcttaacagcttctttaactccaggcctcactggatcct |
14590514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 37757918 - 37757845
Alignment:
| Q |
157 |
ataccgcattctctagctatagctttagcggtgtttatattatcaccggtcaccattctaacagtaattccagc |
230 |
Q |
| |
|
||||| |||||| |||||||||||||||| || ||||| |||||||| || ||||| | ||| || |||||||| |
|
|
| T |
37757918 |
ataccacattctttagctatagctttagctgtatttatgttatcaccagtgaccatgcgaacggttattccagc |
37757845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University