View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_24 (Length: 255)
Name: NF12111_low_24
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7110199 - 7110421
Alignment:
| Q |
1 |
ttataatggattgtttgttcttcaagatcgtcatctttagattggcaacgaagagtcaagggtgttggatttggagccttcaccatattgataatataaa |
100 |
Q |
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| T |
7110199 |
ttataatggattgtatgttcttcaagatcgtcatctttagattggcaacgaagagtcaagggtgttggatttggagccttcaccttattgataatataaa |
7110298 |
T |
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| Q |
101 |
ctgttgtatggcgaagcaagattggtagagttggagcctgcacgttattgttaataatagctatagtctctctag---ccgtgaatgcaaatagtatgat |
197 |
Q |
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| T |
7110299 |
ctgttgtatggcgaagcaagattggtagagttggagcctgcaccttattgt------tagctacagtctctctagccaccgcgaatgcaagtagtatgat |
7110392 |
T |
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| Q |
198 |
taagagtattgaaaactttaaggtaattg |
226 |
Q |
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| T |
7110393 |
taagagtattgaaaactttaagataattg |
7110421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 7116451 - 7116528
Alignment:
| Q |
157 |
atagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaa |
235 |
Q |
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| T |
7116451 |
atagctatagtctctctagccacgaatgcaactagtatgattagtagtattgaaaattttatggtaatt-aacttggaa |
7116528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 17374010 - 17374090
Alignment:
| Q |
155 |
taatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaa |
235 |
Q |
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| T |
17374010 |
taatagctatagtttctctagcttcaaatgagaatagtatgattaggagtatcgaaaatttgaaggtaattgtacttggaa |
17374090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 6606641 - 6606587
Alignment:
| Q |
181 |
aatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaa |
235 |
Q |
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| T |
6606641 |
aatgcaagtagtgtgattatgagtattgaaaattttaaggtaattgaacttggaa |
6606587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 6631798 - 6631720
Alignment:
| Q |
157 |
atagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaa |
235 |
Q |
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| T |
6631798 |
atagctatagtatcactagcctcaaatgcaagtagtatgattatgagtattgaaaattttaagctaattgaatttggaa |
6631720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 9036849 - 9036816
Alignment:
| Q |
27 |
atcgtcatctttagattggcaacgaagagtcaag |
60 |
Q |
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| T |
9036849 |
atcgtcatctttagattggcaacgaagagtcaag |
9036816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 31117808 - 31117727
Alignment:
| Q |
156 |
aatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaatt |
237 |
Q |
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| T |
31117808 |
aatagcgatagtctctctagcctcaaatgcaagtagcatgattaggagtattgatgattttaaggtgattgcacttggaatt |
31117727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 6615728 - 6615674
Alignment:
| Q |
181 |
aatgcaaatagta---tgattaagagtattgaaaactttaaggtaattgaacttg |
232 |
Q |
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| T |
6615728 |
aatgcaaatagtaccatgattaagaatattgaaaattttaaggtaattggacttg |
6615674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 596412 - 596492
Alignment:
| Q |
155 |
taatagctatagtctctctagccgtgaatgcaaatagtatgattaagagtattgaaaactttaaggtaattgaacttggaa |
235 |
Q |
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| T |
596412 |
taatagctatagtttctctagcttcaaatgagaatagtatgattaggagtatcgataatttgaaggtaattgtacttggaa |
596492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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