View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_25 (Length: 244)
Name: NF12111_low_25
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 40756418 - 40756180
Alignment:
| Q |
1 |
cctcaaccaaccttctgaatcaattgttgcagttgttgcctcaatatttcctaaatattctttcataatagcaccgcttttcaaccataactctccttcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40756418 |
cctcaaccaaccttctgaatcaattgttgcagttgttgcctcaatatttcctaaatattctttcataatagtaccgcttttcaaccataactctccttcc |
40756319 |
T |
|
| Q |
101 |
ttgagtggaggcaaaggcttccctgtttcaatgtctaccacttttgcacaaaaagttggaatcagctttccacatgcttctggatgagctttagcatctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40756318 |
ttgagtggaggcaaaggcttccctgtttcaatgtctaccacttttgcacaaaaagttggaatcaactttccacatgcttctggatgagctttagcatctt |
40756219 |
T |
|
| Q |
201 |
tatccgatccaaaaaacgtagctcccccgcaactctctg |
239 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||| |
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| T |
40756218 |
tatccgatccgaaaaacgtagctcccccgcaactttctg |
40756180 |
T |
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