View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12111_low_26 (Length: 226)

Name: NF12111_low_26
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12111_low_26
NF12111_low_26
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-207)||(226333-226540)
[»] chr4 (4 HSPs)
chr4 (1-207)||(14590838-14591045)
chr4 (47-83)||(9987887-9987923)
chr4 (48-83)||(8473675-8473710)
chr4 (47-83)||(41018847-41018883)
[»] chr5 (3 HSPs)
chr5 (48-85)||(9794429-9794466)
chr5 (48-85)||(2838825-2838862)
chr5 (47-83)||(24448936-24448972)
[»] chr1 (1 HSPs)
chr1 (48-83)||(45812590-45812625)
[»] chr7 (3 HSPs)
chr7 (47-85)||(11741839-11741877)
chr7 (48-85)||(19266497-19266534)
chr7 (47-83)||(2662988-2663024)
[»] chr3 (4 HSPs)
chr3 (47-76)||(31831265-31831294)
chr3 (48-81)||(52428532-52428565)
chr3 (88-139)||(45288059-45288111)
chr3 (47-83)||(45948891-45948927)
[»] chr2 (1 HSPs)
chr2 (48-85)||(25249789-25249826)
[»] chr8 (1 HSPs)
chr8 (96-139)||(33867039-33867083)


Alignment Details
Target: scaffold0005 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 226540 - 226333
Alignment:
Q  1 aaggtcacggattcaagtcttaggaacagcctcttgcctnnnnnnntagggtaaggctgcatacaatacaccaaatagtgggatcttgggaccttttccc 100  Q
    ||||||||||||||||||| ||| |||||||||||| ||        ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  226540 aaggtcacggattcaagtcctagaaacagcctcttgtctaaaaaaacagggtaaggctgcatacaatacatcaaatggtgggaccttgggaccttttccc 226441  T
Q  101 gaaccctgcgtatgcaaaagctttag-gcaccaggttgccttgacctttttattttattttctaaggttatggtaaatttatacagtggttggttaatgt 199  Q
    ||||||| ||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  226440 gaaccctacgtatgcaaaaactttagtgcaccaggttgccctggcctttttattttattttctaaggttatggtaaatttatacagtggctggttaatgt 226341  T
Q  200 ttgtaggt 207  Q
    ||||||||    
T  226340 ttgtaggt 226333  T

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Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 14590838 - 14591045
Alignment:
Q  1 aaggtcacggattcaagtcttaggaacagcctcttgcctnnnnnnntagggtaaggctgcatacaatacaccaaatagtgggatcttgggaccttttccc 100  Q
    ||||||||||||||||||| ||| |||||||||||| ||        ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  14590838 aaggtcacggattcaagtcctagaaacagcctcttgtctaaaaaaacagggtaaggctgcatacaatacatcaaatggtgggaccttgggaccttttccc 14590937  T
Q  101 gaaccctgcgtatgcaaaagctttag-gcaccaggttgccttgacctttttattttattttctaaggttatggtaaatttatacagtggttggttaatgt 199  Q
    ||||||| ||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14590938 gaaccctacgtatgcaaaaactttagtgcaccaggttgccctggcctttttattttattttctaaggttatggtaaatttatacagtggctggttaatgt 14591037  T
Q  200 ttgtaggt 207  Q
    ||||||||    
T  14591038 ttgtaggt 14591045  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 9987923 - 9987887
Alignment:
Q  47 tagggtaaggctgcatacaatacaccaaatagtggga 83  Q
    |||||||||||||||||||||||||||||| ||||||    
T  9987923 tagggtaaggctgcatacaatacaccaaatggtggga 9987887  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 8473710 - 8473675
Alignment:
Q  48 agggtaaggctgcatacaatacaccaaatagtggga 83  Q
    ||||||||||||||||||||||||||||| ||||||    
T  8473710 agggtaaggctgcatacaatacaccaaatggtggga 8473675  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 41018883 - 41018847
Alignment:
Q  47 tagggtaaggctgcatacaatacaccaaatagtggga 83  Q
    |||||||||||| | ||||||||||||||||||||||    
T  41018883 tagggtaaggctacgtacaatacaccaaatagtggga 41018847  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 9794466 - 9794429
Alignment:
Q  48 agggtaaggctgcatacaatacaccaaatagtgggatc 85  Q
    |||||||| |||||||||||||||||||||||||||||    
T  9794466 agggtaagactgcatacaatacaccaaatagtgggatc 9794429  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 2838825 - 2838862
Alignment:
Q  48 agggtaaggctgcatacaatacaccaaatagtgggatc 85  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  2838825 agggtaaggctgcgtacaatacaccaaatggtgggatc 2838862  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 24448936 - 24448972
Alignment:
Q  47 tagggtaaggctgcatacaatacaccaaatagtggga 83  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  24448936 tagggtaaggctgcgtacaatacaccaaatggtggga 24448972  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 83
Target Start/End: Complemental strand, 45812625 - 45812590
Alignment:
Q  48 agggtaaggctgcatacaatacaccaaatagtggga 83  Q
    ||||||||||||||||||||||||||||| ||||||    
T  45812625 agggtaaggctgcatacaatacaccaaatggtggga 45812590  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 11741839 - 11741877
Alignment:
Q  47 tagggtaaggctgcatacaatacaccaaatagtgggatc 85  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  11741839 tagggtaaggctgcgtacaatacaccaaatggtgggatc 11741877  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 19266497 - 19266534
Alignment:
Q  48 agggtaaggctgcatacaatacaccaaatagtgggatc 85  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  19266497 agggtaaggctgcgtacaatacaccaaattgtgggatc 19266534  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 2663024 - 2662988
Alignment:
Q  47 tagggtaaggctgcatacaatacaccaaatagtggga 83  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  2663024 tagggtaaggctgcgtacaatacaccaaatggtggga 2662988  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 31831265 - 31831294
Alignment:
Q  47 tagggtaaggctgcatacaatacaccaaat 76  Q
    ||||||||||||||||||||||||||||||    
T  31831265 tagggtaaggctgcatacaatacaccaaat 31831294  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 52428565 - 52428532
Alignment:
Q  48 agggtaaggctgcatacaatacaccaaatagtgg 81  Q
    ||||||||||||| ||||||||||||||||||||    
T  52428565 agggtaaggctgcgtacaatacaccaaatagtgg 52428532  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 45288111 - 45288059
Alignment:
Q  88 gggaccttttcccgaaccctgcgtatgcaaaagctttag-gcaccaggttgcc 139  Q
    ||||||| |||||| ||||||||||||||| |||||||| |||||||| ||||    
T  45288111 gggacctcttcccggaccctgcgtatgcaagagctttagtgcaccaggctgcc 45288059  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 45948927 - 45948891
Alignment:
Q  47 tagggtaaggctgcatacaatacaccaaatagtggga 83  Q
    |||||||||||||||||||||||||||| | ||||||    
T  45948927 tagggtaaggctgcatacaatacaccaattggtggga 45948891  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 85
Target Start/End: Complemental strand, 25249826 - 25249789
Alignment:
Q  48 agggtaaggctgcatacaatacaccaaatagtgggatc 85  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  25249826 agggtaaggctgcgtacaatacaccaaatggtgggatc 25249789  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 139
Target Start/End: Original strand, 33867039 - 33867083
Alignment:
Q  96 ttcccgaaccctgcgtatgcaaaagctttag-gcaccaggttgcc 139  Q
    ||||||||||||||||||||| ||||||||| ||||| |||||||    
T  33867039 ttcccgaaccctgcgtatgcagaagctttagtgcaccgggttgcc 33867083  T

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