View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12111_low_28 (Length: 216)

Name: NF12111_low_28
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12111_low_28
NF12111_low_28
[»] scaffold0725 (1 HSPs)
scaffold0725 (1-200)||(1670-1869)
[»] chr7 (5 HSPs)
chr7 (8-68)||(35542248-35542308)
chr7 (81-145)||(35542334-35542398)
chr7 (7-58)||(40033439-40033490)
chr7 (8-57)||(9416744-9416793)
chr7 (8-44)||(40034396-40034432)
[»] chr5 (10 HSPs)
chr5 (83-197)||(6531345-6531459)
chr5 (15-68)||(9833309-9833362)
chr5 (8-68)||(6532512-6532571)
chr5 (83-150)||(9833391-9833458)
chr5 (8-68)||(9833794-9833854)
chr5 (83-145)||(6532422-6532484)
chr5 (7-68)||(16834036-16834097)
chr5 (7-68)||(27129478-27129539)
chr5 (8-68)||(6531258-6531317)
chr5 (15-55)||(21745965-21746005)
[»] chr4 (2 HSPs)
chr4 (8-57)||(23187660-23187709)
chr4 (1-57)||(33690708-33690764)
[»] chr8 (3 HSPs)
chr8 (2-68)||(7350846-7350912)
chr8 (18-58)||(2336773-2336813)
chr8 (8-56)||(38364901-38364949)
[»] chr1 (1 HSPs)
chr1 (1-54)||(9553695-9553748)
[»] chr6 (2 HSPs)
chr6 (92-152)||(22881432-22881489)
chr6 (92-152)||(22914406-22914463)
[»] chr3 (1 HSPs)
chr3 (8-53)||(25707219-25707264)
[»] chr2 (1 HSPs)
chr2 (1-42)||(43700451-43700492)


Alignment Details
Target: scaffold0725 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 1670 - 1869
Alignment:
Q  1 catatggattatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttattaagcacatagaagaaaattatccatgaattaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1670 catagggattatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttattaagcacatagaagaaaattatccatgaattaa 1769  T
Q  101 atggaaaggtaagtgcatagaagaaaatttatttagatatagaaggcagaaannnnnnnagcgcaaaagcttatgaaagcaacaatttaaggaaggactt 200  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||||||||    
T  1770 atggaacgctaagtgcatagaagaaaatttatttagatatagaaggcagaaatttttttagcgcaaaagcttatgaaagcaacaatttatggaaggactt 1869  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 35542248 - 35542308
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35542248 attatccttttcttgaaaaatgataattttctctatgatattaatcattcactattttatt 35542308  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 81 - 145
Target Start/End: Original strand, 35542334 - 35542398
Alignment:
Q  81 gaaaattatccatgaattaaatggaaaggtaagtgcatagaagaaaatttatttagatatagaag 145  Q
    |||||||||||||||||||||||| |   | ||||||||||||||||||||||||||||||||||    
T  35542334 gaaaattatccatgaattaaatgggacactgagtgcatagaagaaaatttatttagatatagaag 35542398  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 40033439 - 40033490
Alignment:
Q  7 gattatccttttcttgaaaaatgataattttctctatcatattaatcattca 58  Q
    ||||||||||||||| ||||| |||||||||||||||| |||||||||||||    
T  40033439 gattatccttttcttaaaaaaggataattttctctatcctattaatcattca 40033490  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 9416744 - 9416793
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatcatattaatcattc 57  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  9416744 attatccttttcttgaaaaatgataattttcactatcctattaaacattc 9416793  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 40034432 - 40034396
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatc 44  Q
    ||||||||||||||||||||| |||||||||||||||    
T  40034432 attatccttttcttgaaaaataataattttctctatc 40034396  T

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Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 83 - 197
Target Start/End: Original strand, 6531345 - 6531459
Alignment:
Q  83 aaattatccatgaattaaatggaaaggtaagtgcatagaagaaaatttatttagatatagaaggcagaaannnnnnnagcgcaaaagcttatgaaagcaa 182  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||| ||||||       | |||| ||| ||||||||||||    
T  6531345 aaattatccatgaaataaatggaacactaagtgcatagaagaaaatttatttagatatagaagccagaaaaaaatttaacgcagaagattatgaaagcaa 6531444  T
Q  183 caatttaaggaagga 197  Q
    ||| ||| |||||||    
T  6531445 caaattatggaagga 6531459  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 9833309 - 9833362
Alignment:
Q  15 ttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9833309 ttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 9833362  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 6532571 - 6532512
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6532571 attatccttttcttgaaaaatgataattttctctatcatattaat-attcactattttatt 6532512  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 9833391 - 9833458
Alignment:
Q  83 aaattatccatgaattaaatggaaaggtaagtgcatagaagaaaatttatttagatatagaaggcaga 150  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||    
T  9833391 aaattatccatgaattaaatggaacgataagtgcatagaagaaaatttatttggatatagaagccaga 9833458  T

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Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 68
Target Start/End: Complemental strand, 9833854 - 9833794
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 68  Q
    |||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||    
T  9833854 attatccttttcttaaaaaattatagttttctctatcatattaatcattcactattttatt 9833794  T

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Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 145
Target Start/End: Complemental strand, 6532484 - 6532422
Alignment:
Q  83 aaattatccatgaattaaatggaaaggtaagtgcatagaagaaaatttatttagatatagaag 145  Q
    |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| |||||    
T  6532484 aaattatccatgaaataaatggaatgctaagtgcatagaagaaaatttatttagatagagaag 6532422  T

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Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 16834036 - 16834097
Alignment:
Q  7 gattatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 68  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||    
T  16834036 gattatccttttcttgaaaaaggataattttctctatcctattaatcattcaattttttatt 16834097  T

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Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 27129478 - 27129539
Alignment:
Q  7 gattatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 68  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||    
T  27129478 gattatccttttcttgaaaaaggataattttctctatcctattaatcattcaattttttatt 27129539  T

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Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 6531258 - 6531317
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 68  Q
    |||||| |||| |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  6531258 attatcatttttttgaaaaatggtaattttctctatcatattaat-attcactattttatt 6531317  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 21746005 - 21745965
Alignment:
Q  15 ttttcttgaaaaatgataattttctctatcatattaatcat 55  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  21746005 ttttcttgaaaaatgttaattttctctatcctattaatcat 21745965  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 23187709 - 23187660
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatcatattaatcattc 57  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23187709 attatccttttcttgaaaaatgataattttctctatcctattaatcattc 23187660  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33690708 - 33690764
Alignment:
Q  1 catatggattatccttttcttgaaaaatgataattttctctatcatattaatcattc 57  Q
    ||||| |||| | ||||||||||||||||||||||||||||| | ||||||| ||||    
T  33690708 catattgattttacttttcttgaaaaatgataattttctctaacttattaattattc 33690764  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 7350912 - 7350846
Alignment:
Q  2 atatggattatccttttcttgaaaaatgataattttctctatcatattaatcattcactattttatt 68  Q
    |||| ||||||||||||||| ||||||||||||||||| |||| |||||| |||||| | |||||||    
T  7350912 atattgattatccttttcttaaaaaatgataattttctatatcctattaaacattcaattttttatt 7350846  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 2336813 - 2336773
Alignment:
Q  18 tcttgaaaaatgataattttctctatcatattaatcattca 58  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  2336813 tcttgaaaaatgataattttttctatcctattaatcattca 2336773  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 38364901 - 38364949
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatcatattaatcatt 56  Q
    |||||| |||||||| ||||||| ||||||||||||| |||||||||||    
T  38364901 attatcattttcttggaaaatgacaattttctctatcctattaatcatt 38364949  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9553748 - 9553695
Alignment:
Q  1 catatggattatccttttcttgaaaaatgataattttctctatcatattaatca 54  Q
    ||||| ||||||  |||||||||||||||||||||||||||||| |||||||||    
T  9553748 catattgattatttttttcttgaaaaatgataattttctctatcttattaatca 9553695  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 22881489 - 22881432
Alignment:
Q  92 atgaattaaatggaaaggtaagtgcatagaagaaaatttatttagatatagaaggcagaaa 152  Q
    ||||||||||||||| | |||||||   |||||||||||||||| ||||||||| ||||||    
T  22881489 atgaattaaatggaacgctaagtgc---gaagaaaatttatttaaatatagaagccagaaa 22881432  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 22914463 - 22914406
Alignment:
Q  92 atgaattaaatggaaaggtaagtgcatagaagaaaatttatttagatatagaaggcagaaa 152  Q
    ||||||||||||||| | |||||||   |||||||||||||||| ||||||||| ||||||    
T  22914463 atgaattaaatggaacgctaagtgc---gaagaaaatttatttaaatatagaagccagaaa 22914406  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 25707264 - 25707219
Alignment:
Q  8 attatccttttcttgaaaaatgataattttctctatcatattaatc 53  Q
    |||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  25707264 attatcattttcttgaaaaatggtaattctctctatcctattaatc 25707219  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43700492 - 43700451
Alignment:
Q  1 catatggattatccttttcttgaaaaatgataattttctcta 42  Q
    ||||| ||||||  ||||||||||||||||||||||||||||    
T  43700492 catattgattatatttttcttgaaaaatgataattttctcta 43700451  T

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