View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12111_low_4 (Length: 612)
Name: NF12111_low_4
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 6 - 598
Target Start/End: Original strand, 7831364 - 7831956
Alignment:
| Q |
6 |
gcagaacctgtgtggcatgtgggacatattttggagatgttgatgagaagtgagacaaatctaatttctgatgcacaagttcaaagtgcaggccaagtgg |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7831364 |
gcagaacatgtgtggcatgtgggacatattttggagatgttgatgagaagtgagacaaatctaatttctgatgcacaagttcaaagtgcaggccaagtga |
7831463 |
T |
|
| Q |
106 |
ttgtagatttactgacaacaacagcacgacatgtgaaggaaaaaggccacgaggcattgtatattaatatgagtataccaattatactatagcaatgtga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
|
|
| T |
7831464 |
ttgtagatttactgacaacaacagcacgacatgtgaaggaaaaaggccacgaggcattgtatattaatataagtataccaattatactagaggaatgtga |
7831563 |
T |
|
| Q |
206 |
atgtcttcttcatgcagatttagccgaacaattggaatcctctcagacccttctacctcagcagcagnnnnnnngaggagtgaaagcacagagaaaggat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7831564 |
atgtcttcttcatgcagatttagccgaacaattggaatcctctcagacccttctacctcagcagcagaaaaaaagaggagtgaaagcacagagaaaggat |
7831663 |
T |
|
| Q |
306 |
gtacagaatgaagagatgtgtcaagagaaaccgagaggaactggagagagtttgttctggaaaggagtcgaagatgaagtctcagctccaagacgtcgct |
405 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7831664 |
gtatagaatgaagagatgtgtcaagagaaaccgagaggaactggagagagtttgttctggaaaggagccgaagatgaagtctcagctccaagacgtcgct |
7831763 |
T |
|
| Q |
406 |
attggggaagcgttgagttacaagatggagatccacttgtttggagaagctggaatgggaaagaaaccttttgggagagggtgagaaatattgttattct |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7831764 |
attggggaagcgttgagttacaagatggagatccacttgtttggagaagctggaatgggaaagaaaccttttgggagagggtgagaaatattgttattct |
7831863 |
T |
|
| Q |
506 |
gttgaaatgccaaaattgttctgtagaggaagcttcaagctcaagtaatgtagagtatttggatcctgaagtggaagatttgttgaggagtat |
598 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7831864 |
gttgaaatgccaaaattgttctgtagaggaagcttcaagctcaagtaatgtagagtatttggatcctgaagtggaagatttgttgaggagtat |
7831956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University