View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12111_low_5 (Length: 585)

Name: NF12111_low_5
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12111_low_5
NF12111_low_5
[»] chr4 (3 HSPs)
chr4 (18-574)||(35766438-35766994)
chr4 (206-313)||(19358741-19358848)
chr4 (18-56)||(19356940-19356978)
[»] chr7 (10 HSPs)
chr7 (431-574)||(36260088-36260229)
chr7 (205-395)||(36254976-36255168)
chr7 (243-313)||(46769018-46769088)
chr7 (451-574)||(36262908-36263029)
chr7 (451-525)||(36255221-36255293)
chr7 (281-319)||(18953261-18953299)
chr7 (281-319)||(18983308-18983346)
chr7 (281-319)||(18997954-18997992)
chr7 (18-56)||(20495211-20495249)
chr7 (342-395)||(20495533-20495586)
[»] chr5 (4 HSPs)
chr5 (18-59)||(29598115-29598156)
chr5 (18-58)||(29641816-29641856)
chr5 (18-58)||(29647134-29647174)
chr5 (18-58)||(29821176-29821216)
[»] chr6 (1 HSPs)
chr6 (243-292)||(30398771-30398820)


Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 18 - 574
Target Start/End: Original strand, 35766438 - 35766994
Alignment:
Q  18 gttcatgcaatggatggctttgtttgcttggttattcttaccactttacatatataaatacctggctgcgtttctggaaccctgccactcataaaatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35766438 gttcatgcaatggatggctttgtttgcttggttattcttaccactttacatatataaatacctggctgcgtttctggaaccctgccactcataaaatttc 35766537  T
Q  118 cccaaagttagggcatttttgggattatttatgtctgtatgtatatccattttaagtttgggtttggttttgattgataaattgtcggagacttataagg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35766538 cccaaagttagggcatttttgggattatttatgtctgtatgtatatccattttaagtttgggtttggttttgattgataaattgtcggagacttataagg 35766637  T
Q  218 tagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaagttttcctgtggc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35766638 tagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaagttttcctgtggc 35766737  T
Q  318 tcttgttccttttaatacaaaccatggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcgcaataaacttttttatgttggt 417  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35766738 tcttgttccttttaatacaaaccatggtgtgaatgatggtgtgtatctgaatggttgtctaaattggttggcccttcgcaataaacttttttatgttggt 35766837  T
Q  418 gtttctggttaggagaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35766838 gtttctggttaggagaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttt 35766937  T
Q  518 tgatgaaacgtcagctattgaaccattgttaagtatattgatggactgtctctgctt 574  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35766938 tgatgaaacgtcagctattgaaccattgttaagtatattgatggactgtctttgctt 35766994  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 313
Target Start/End: Original strand, 19358741 - 19358848
Alignment:
Q  206 agacttataaggtagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaag 305  Q
    ||||||||||||| |||  |||| ||||  ||||||||||| | ||||||  || || |||||||| |||| || |||||||||||| ||  |||||||     
T  19358741 agacttataaggttgtgatgttacttttggatgaagctgaaaacagaactcgtgcgcgagttttaaatttgcgtgataatgtttggaaacctattcaaat 19358840  T
Q  306 ttttcctg 313  Q
    ||||||||    
T  19358841 ttttcctg 19358848  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 19356940 - 19356978
Alignment:
Q  18 gttcatgcaatggatggctttgtttgcttggttattctt 56  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  19356940 gttcttgcaatggattgctttgtttgcttggttattctt 19356978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 431 - 574
Target Start/End: Original strand, 36260088 - 36260229
Alignment:
Q  431 agaaaatggatattagagaatttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtca 530  Q
    |||||||| || ||| | |||||||||||||||| ||||| |||| ||||  ||||| |||||| |||||||||||||| | ||||||||||||| ||||    
T  36260088 agaaaatgaatgttaaaaaatttgtgattgtttcacttgatctggaaaca--gagacatacacaaagttgatgcctccttgcggttttgatgaaatgtca 36260185  T
Q  531 gctattgaaccattgttaagtatattgatggactgtctctgctt 574  Q
     ||||||| |||| | || |||||||| |||| ||||| |||||    
T  36260186 cctattgagccatcggtatgtatattgttggattgtctttgctt 36260229  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 205 - 395
Target Start/End: Original strand, 36254976 - 36255168
Alignment:
Q  205 gagacttataaggtagtgcagttattttttaatgaagctgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaa 304  Q
    |||||||||||||| |||  |||| ||||  |||| | | || |||||||||| ||||||  |||| || || ||||||||||||||| ||  |||||||    
T  36254976 gagacttataaggttgtgatgttaattttggatgatgttaaaaatagaactgacgtgcaaactttatgtgtgtgtaataatgtttggaaacctattcaaa 36255075  T
Q  305 gttttcctgtggctcttgttccttt--taatacaaaccatggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcg 395  Q
     ||||||||  | |||| |||||||  | |||| |  | ||||||||||||||||| |||| |||||||| || | |||||||| || |||||    
T  36255076 attttcctgctgttcttcttccttttgtgatactagtcctggtgtgaatgatggtgtgtatttgaatggtagttttaattggttggcacttcg 36255168  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 313
Target Start/End: Original strand, 46769018 - 46769088
Alignment:
Q  243 tgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttggagacgcattcaaagttttcctg 313  Q
    |||| |||||||| ||||||||||||| ||| ||||| ||||| ||||||||   ||||||||||||||||    
T  46769018 tgaaaatagaactcatgtgcaagttttgagtgtgggtgataatatttggagaactattcaaagttttcctg 46769088  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 574
Target Start/End: Original strand, 36262908 - 36263029
Alignment:
Q  451 tttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaacgtcagctattgaaccattgttaag 550  Q
    ||||||||||||||  |||| || ||||||  ||||| |||||||||   ||||||||  | ||||||||||||| |||| || |||| ||||   || |    
T  36262908 tttgtgattgtttcatttgatctaggaaca--gagacatacacacagccaatgcctccgtgtggttttgatgaaatgtcacctgttgagccatcaatatg 36263005  T
Q  551 tatattgatggactgtctctgctt 574  Q
    |||||||||||||||||| |||||    
T  36263006 tatattgatggactgtctttgctt 36263029  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 525
Target Start/End: Original strand, 36255221 - 36255293
Alignment:
Q  451 tttgtgattgtttcgcttgacctgggaacatagagacgtacacacagttgatgcctcctgggggttttgatgaaa 525  Q
    |||||||||||| ||||||| ||||||||  |||||| ||||| ||| ||||||||||  | |||||||||||||    
T  36255221 tttgtgattgttgcgcttgatctgggaac--agagacatacacgcagctgatgcctccgcgtggttttgatgaaa 36255293  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 18953299 - 18953261
Alignment:
Q  281 ataatgtttggagacgcattcaaagttttcctgtggctc 319  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  18953299 ataatgtttggagacatattcaaagttttcctgtggctc 18953261  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 18983346 - 18983308
Alignment:
Q  281 ataatgtttggagacgcattcaaagttttcctgtggctc 319  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  18983346 ataatgtttggagacatattcaaagttttcctgtggctc 18983308  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 281 - 319
Target Start/End: Complemental strand, 18997992 - 18997954
Alignment:
Q  281 ataatgtttggagacgcattcaaagttttcctgtggctc 319  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  18997992 ataatgtttggagacatattcaaagttttcctgtggctc 18997954  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 20495211 - 20495249
Alignment:
Q  18 gttcatgcaatggatggctttgtttgcttggttattctt 56  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  20495211 gttcttgcaatggatggctttgtttgcttggtttttctt 20495249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 20495533 - 20495586
Alignment:
Q  342 tggtgtgaatgatggtgcgtatctgaatggttgtctaaattggttagcccttcg 395  Q
    ||||||||||||||||| |||| |||||||| |||| |||||||| || |||||    
T  20495533 tggtgtgaatgatggtgtgtatttgaatggtagtctgaattggttggctcttcg 20495586  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 29598156 - 29598115
Alignment:
Q  18 gttcatgcaatggatggctttgtttgcttggttattcttacc 59  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29598156 gttcatgcaatggattgctttgtttgcttggttattcttacc 29598115  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 29641816 - 29641856
Alignment:
Q  18 gttcatgcaatggatggctttgtttgcttggttattcttac 58  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  29641816 gttcatgcaatggattgctttgtttgcttggttattcttac 29641856  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 29647134 - 29647174
Alignment:
Q  18 gttcatgcaatggatggctttgtttgcttggttattcttac 58  Q
    ||||||||||| ||| |||||||||||| ||||||||||||    
T  29647134 gttcatgcaatagattgctttgtttgctcggttattcttac 29647174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 29821216 - 29821176
Alignment:
Q  18 gttcatgcaatggatggctttgtttgcttggttattcttac 58  Q
    ||||||||||||||| ||||||||||||  |||||||||||    
T  29821216 gttcatgcaatggattgctttgtttgctcagttattcttac 29821176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 30398771 - 30398820
Alignment:
Q  243 tgaagatagaactgatgtgcaagttttaagtttgggtaataatgtttgga 292  Q
    |||| |||||||| |||||| |||||||||| ||| ||||||||||||||    
T  30398771 tgaaaatagaactcatgtgcgagttttaagtgtggctaataatgtttgga 30398820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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