View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_6 (Length: 574)
Name: NF12111_low_6
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 36754086 - 36754314
Alignment:
| Q |
15 |
acatgctacaaatttcaatcaagtaatcaattgcaatttaatctatttggaaaacatcaaaatcgtaaaaacgtcacaagctacacattggagcttctaa |
114 |
Q |
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| T |
36754086 |
acatgctacaaatttcaatcaagtaatcaattgcaatttaatctatttggaaaacatcaaaatcgtaaaaacgtcacaagctacacattggagcttctaa |
36754185 |
T |
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| Q |
115 |
aaatcacgacgagggaacttgatactcaaggtagaagttgaccacactcaattaaattcactggtgaaac-ttttttatgcaaataaggatctcatgtat |
213 |
Q |
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| T |
36754186 |
aaatcatgatgagggaacttgatactcaaggtagaagttgaccacactcaattaaattcactggtgaaactttttttatgcaaataaggatctgatgtat |
36754285 |
T |
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| Q |
214 |
gtacaattacgaagactataatatctcaa |
242 |
Q |
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| T |
36754286 |
gtacaattacgaagactataatatctcaa |
36754314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 456 - 561
Target Start/End: Original strand, 36754547 - 36754652
Alignment:
| Q |
456 |
atgttatcattctcctttgttcttccattcacattgacctgaaatttaatcttaaaccaaatggtttaaaaacttataagcatttaaaacttatgttaca |
555 |
Q |
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| T |
36754547 |
atgttatcattttcctttgtttttccattcacattgacccgaaatttaatcttaaaccaaatggtttaaaaacttataagcatttaaaacttatgttaca |
36754646 |
T |
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| Q |
556 |
ccacag |
561 |
Q |
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|||||| |
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| T |
36754647 |
ccacag |
36754652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 36767158 - 36767222
Alignment:
| Q |
56 |
tctatttggaaaacatcaaaatcgtaaaaacgtcacaagctacacattggagcttctaaaaatca |
120 |
Q |
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| T |
36767158 |
tctatttggaaaacatcaaaattgtcaaaacttcttaagctacacattaaagcttctaaaaatca |
36767222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Original strand, 12434203 - 12434240
Alignment:
| Q |
374 |
gttgaataaagttgaatgtataacttttaagacaatta |
411 |
Q |
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| T |
12434203 |
gttgaataaagttgaatgcacaacttttaagacaatta |
12434240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 411
Target Start/End: Complemental strand, 44498338 - 44498301
Alignment:
| Q |
374 |
gttgaataaagttgaatgtataacttttaagacaatta |
411 |
Q |
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| T |
44498338 |
gttgaataaagttgaatgcacaacttttaagacaatta |
44498301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 25059258 - 25059222
Alignment:
| Q |
374 |
gttgaataaagttgaatgtataacttttaagacaatt |
410 |
Q |
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|||||||||||||||||||| ||||||| |||||||| |
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| T |
25059258 |
gttgaataaagttgaatgtacaacttttgagacaatt |
25059222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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