View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_7 (Length: 573)
Name: NF12111_low_7
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 14 - 566
Target Start/End: Original strand, 44350761 - 44351313
Alignment:
| Q |
14 |
agcagagaatttaaaaaccattaactattattgtcaatggtaaataattgctaaaactaacataaataattttcagctttacttatcagtgaaaaagggg |
113 |
Q |
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| T |
44350761 |
agcagagaatttaaaaaccattaactattattgtcaatggtaaataattgctaaaactaacataaataattttcagctttacttatcagtgaaaaagggg |
44350860 |
T |
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| Q |
114 |
tgaagaggatttctgaattatgcccatcaaataagagaactattggcagacactcaccataagtacccccatgagtcatgggagatacattatcacatgg |
213 |
Q |
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| T |
44350861 |
tgaagagtatttctgaattatgcccatcaaataagagaactattggcagacactcaccataagtacccccatgagtcatgggagatacattatcacatgg |
44350960 |
T |
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| Q |
214 |
tgaaaggaaaattttgatgcaaaatttggataatgggagaaaatgtttggattgaattcaacataccatccaggccagttctcagtccacattttgggcc |
313 |
Q |
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| T |
44350961 |
tgaaaggaaaattttgatgcaaaatatggataatgggagaaaatgtttggattgaattcaacataccatccaggccagttctcagtccacattttgggcc |
44351060 |
T |
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| Q |
314 |
tctttggagaggtaggtgtaaattggtcacagtagaatgagttgcaagtatcaatctgcaaaagaaaacatttactaaaaatgaagtaaaatttaagaat |
413 |
Q |
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| T |
44351061 |
tctttggagaggtaggtgtaaattggtcacagtagaatgagttgcaagtatcaatctgcaaaagaaaacatttactaaaaatgaagtaaaatttaagaat |
44351160 |
T |
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| Q |
414 |
tttgaagcaagtgtaatgatgcaagataacgcatattatgacttatcatccaaaatactaacatggtttaaacaagcactatgaatctatgttaaattca |
513 |
Q |
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| T |
44351161 |
tttgaagcaagtgtaatgatgcaagataacgcatattatgacttatcatccaaaatactaacattgtttaaacaagcactatgaatctatgttaaattca |
44351260 |
T |
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| Q |
514 |
catttgcaatgtaataactatttcaaaaaatggtcatcttaccacaggttctg |
566 |
Q |
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| T |
44351261 |
catttgcaatgtaataactatttaaaaaaatggtcatcttaccacaggatctg |
44351313 |
T |
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