View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12111_low_8 (Length: 465)
Name: NF12111_low_8
Description: NF12111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12111_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 27 - 417
Target Start/End: Complemental strand, 7108629 - 7108239
Alignment:
| Q |
27 |
gtccagaaaaccatagtaatctcattgattcaaggaatactgatacacaatttgttcttatatggtttgccattttcattgttaaaagatttggagagaa |
126 |
Q |
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| T |
7108629 |
gtccagaaaaccatagtaatctcattgattcaaggaatactgatacacaatttgtccttatatgctttgctattttcattgttaaaagatttggagagaa |
7108530 |
T |
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| Q |
127 |
gcattaggaacttcatttggagtggggacattgagaagaggaaattagtcattgtggcatggaaaaaatttgtaagccattagaggagggagggttaggt |
226 |
Q |
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| T |
7108529 |
gcattaggaacttcatttggagtggggacattgagaagaggaaattagtcattgtggcatgaaaaaaatttgtaagccattagaggaaggagggttaggt |
7108430 |
T |
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| Q |
227 |
attagatatctaatccatcttaatgaagcttataatcttaagctttgttgagagaatggcgtcttctgatacggatcgggcaaagatgttaaggtctaga |
326 |
Q |
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| T |
7108429 |
attagatatctaatccatcttaatgaagcttataatcttaagctttgttgggagaatggcgtcttctgatacggattgggcaaagatgttaaggtctaga |
7108330 |
T |
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| Q |
327 |
gttttaaaaaacgatagatgtatttcttatcatattttctcctctttatcgagtagttttaaaagtgagtataatcttgtcatatttctta |
417 |
Q |
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| T |
7108329 |
gttttaaaaaatgatagatgtatttcttatcatattttctcctctttatcgagtagttttaaaagtgagtataatcttgtcatatttctta |
7108239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 454
Target Start/End: Complemental strand, 7108062 - 7108025
Alignment:
| Q |
417 |
atcatatttgttgaattatcaggtgctatgatgtccat |
454 |
Q |
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| T |
7108062 |
atcatatttgttgaattatcaggtgctatgatgaccat |
7108025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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