View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12112_high_1 (Length: 521)
Name: NF12112_high_1
Description: NF12112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12112_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 7 - 504
Target Start/End: Complemental strand, 10976166 - 10975669
Alignment:
| Q |
7 |
gcagcacagaccaagaaaaaccaagcaacgatgtaaactcaaatctaaaagcattctcagcagcactagcactctcatcaatcctcatctcatcaccact |
106 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10976166 |
gcagcacaaaccaagaaaaaccaaccaacgatgtaaactcaaatctaaaagcattctcagcagcactagcactctcatcaatcctcatctcatcaccact |
10976067 |
T |
|
| Q |
107 |
ccccgctgtcgccgacatctccggtctaacaccatgcagagaatcaaaacaattcgccaaacgtgagaaacaatcaatcaaaaagcttgaatcatccctc |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
10976066 |
ccccgctgtcgccgacatctccggcctaacaccatgcagagaatcaaaacaattcgccaaacgtgagaaacaatcaatcaaaaagcttgaatcatcactc |
10975967 |
T |
|
| Q |
207 |
aagctttacgctccggacagtgctccagcgctggccataaaagcaacagttgagaaaaccaagagaaggtttgataactatggaaagcaaggtttgttgt |
306 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10975966 |
aagctttacgctccggacagcgctccagcgctggccataaaagcaacagttgagaaaaccaagagaaggtttgataactatggaaagcaaggtttgttgt |
10975867 |
T |
|
| Q |
307 |
gtggtgctgatggtttaccgcatttgatagtgaatggtgatcaaagacattggggtgagtttatcacaccagggatattgtttttgtatattgctggttg |
406 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10975866 |
gtggtgctgatggtttaccacatttgatagtgaatggtgatcaaagacattggggtgagtttatcacaccagggatattgtttttgtatattgctggttg |
10975767 |
T |
|
| Q |
407 |
gattggatgggttggtaggagttatttgattgctattcgtgatgagaagaaacctactcagaaagagattattattgatgttcctcttgcttctagat |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10975766 |
gattggatgggttggtaggagttatttgattgctattcgtgatgagaagaaacctactcagaaagagattattattgatgttcctcttgcttctagat |
10975669 |
T |
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