View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12112_low_2 (Length: 501)
Name: NF12112_low_2
Description: NF12112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12112_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 484; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 43076901 - 43076410
Alignment:
| Q |
1 |
taacctcaaatttccaagtcacagtttcttcacgtaatcccaacgataaaattggtatctactatgatcgtcttgattcttacgtcacataccggagcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076901 |
taacctcaaatttccaagtcacagtttcttcacgtaatcccaacgataaaattggtatctactacgatcgtcttgattcttacgtcacataccggagcca |
43076802 |
T |
|
| Q |
101 |
acaaattacttacagaaccgccatacctccgtcgtatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076801 |
acaaattacttacagaaccgccatacctccgtcgtatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagct |
43076702 |
T |
|
| Q |
201 |
ccatataactctgttgctcttagccaagaccaggataacggtaacgttcttgttgtcgttaaatttgatggtagggttaggtggaaggttggtgctttta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076701 |
ccatataactctgttgctcttagccaagaccaggataacggtaacgttcttgttgtcgttaaatttgatggtagggttaggtggaaggttggtgctttta |
43076602 |
T |
|
| Q |
301 |
tttctggtcattaccatatttttgttcgttgtcctgcttttatcacatttggtccaagaagtaacggtattagcgtcggtgatagcggcgctgttaagta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076601 |
tttctggtcattaccatatttttgttcgttgtcctgcttttatcacgtttggtccaagaagtaacggtattagcgtcggtgatagcggcgctgttaagta |
43076502 |
T |
|
| Q |
401 |
tcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactccttcctctattcttctctgcttct |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43076501 |
tcagattgttcaacggtgcactgtcagtgtttgatagtcaacgatgttgagtatattgtgtttcactccttcctctattcttctctgcttct |
43076410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 35 - 492
Target Start/End: Complemental strand, 43087094 - 43086637
Alignment:
| Q |
35 |
taatcccaacgataaaattggtatctactatgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcg |
134 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43087094 |
taatcccaacaataaaatcggtatctactacgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcg |
43086995 |
T |
|
| Q |
135 |
tatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccagg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43086994 |
tatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccagg |
43086895 |
T |
|
| Q |
235 |
ataacggtaacgttcttgttgtcgttaaatttgatggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43086894 |
ataacggtaacgttcttgttgtcgttaaatttgatggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcc |
43086795 |
T |
|
| Q |
335 |
tgcttttatcacatttggtccaagaagtaacggtattagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttga |
434 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43086794 |
tgcttttatcacgtttggtccaagaagtaacggtattagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttga |
43086695 |
T |
|
| Q |
435 |
tagtcaacgatgttgagtatattgtgtttcactccttcctctattcttctctgcttct |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43086694 |
tagtcaacgatgttgagtatattgtgtttcactccttcctctattcttctctgcttct |
43086637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 35 - 492
Target Start/End: Complemental strand, 43090765 - 43090308
Alignment:
| Q |
35 |
taatcccaacgataaaattggtatctactatgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcg |
134 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090765 |
taatcccaacaataaaatcggtatctactacgatcgtcttgattcttacgtcacataccggagccaacaaattacttacagaaccgccatacctccgtcg |
43090666 |
T |
|
| Q |
135 |
tatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccagg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090665 |
tatcagggacacaaagaggttgatgtttggtctccgtttgtttacggaacaaacgttccggtagctccatataactctgttgctcttagccaagaccagg |
43090566 |
T |
|
| Q |
235 |
ataacggtaacgttcttgttgtcgttaaatttgatggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090565 |
ataacggtaacgttcttgttgtcgttaaatttgatggtagggttaggtggaaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcc |
43090466 |
T |
|
| Q |
335 |
tgcttttatcacatttggtccaagaagtaacggtattagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttga |
434 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090465 |
tgcttttatcacgtttggtccaagaagtaacggtattagcgtcggtgatagcggcgctgttaagtatcagattgttcaacggtgcactgtcagtgtttga |
43090366 |
T |
|
| Q |
435 |
tagtcaacgatgttgagtatattgtgtttcactccttcctctattcttctctgcttct |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090365 |
tagtcaacgatgttgagtatattgtgtttcactccttcctctattcttctctgcttct |
43090308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43091090 - 43091050
Alignment:
| Q |
1 |
taacctcaaatttccaagtcacagtttcttcacgtaatccc |
41 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091090 |
taacctcaaatttccaagtcacagtttcttcacgtaatccc |
43091050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 25247685 - 25247505
Alignment:
| Q |
1 |
taacctcaaatttccaagtcacagtttcttcacgtaatcccaacgataaaattggtatctactatgatcgtcttgattcttacgtcacataccggagcca |
100 |
Q |
| |
|
|||||||||| || ||||| ||| |||| || || |||||||||||||| || ||| | ||||| |||||||| ||| ||||| | || ||||||||||| |
|
|
| T |
25247685 |
taacctcaaactttcaagtaacactttcgtctcgaaatcccaacgataacatcggtgtatactacgatcgtctcgatacttacatgacctaccggagcca |
25247586 |
T |
|
| Q |
101 |
acaaattacttacagaaccgccatacctccgtcgtatcagggacacaaagaggttgatgtttggtctccgtttgtttacgg |
181 |
Q |
| |
|
||| |||||| | | ||||||||||| || || || || || ||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
25247585 |
acagattactctccggaccgccataccgccttcttaccaaggtcacaatgagtatgacgtttggtctccgtttgtttacgg |
25247505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 285 - 339
Target Start/End: Complemental strand, 25247401 - 25247347
Alignment:
| Q |
285 |
aaggttggtgcttttatttctggtcattaccatatttttgttcgttgtcctgctt |
339 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||| |
|
|
| T |
25247401 |
aaggttggtgcttttatttctggtcgttatcatatacatgttcgttgccctgctt |
25247347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University