View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12112_low_3 (Length: 446)
Name: NF12112_low_3
Description: NF12112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12112_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 46 - 444
Target Start/End: Complemental strand, 30262750 - 30262337
Alignment:
| Q |
46 |
gtaaacaaacccttaatattttatcgagaaatgtcagccatacctattttaacacactctttcttatattc--------------tgaaatacatgcgag |
131 |
Q |
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| T |
30262750 |
gtaaacaaacccttaatattttatcgagtaatgtagaccatacctattttaacacactcttttttatactcggtctattgttaaatgaaatatatgcgag |
30262651 |
T |
|
| Q |
132 |
tcacactactttgaaaatgaatgcaactcacgtgtagttcacacaataaaagaatgagtattnnnnnnntgttaaaataaatgttgctaacattattctc |
231 |
Q |
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| T |
30262650 |
tcacaccactttgaaaatgaatacaactcacgtgtatttcacacaataaaagaatgagtattaaaaaaatgataaaataaatgttgctaacattattctc |
30262551 |
T |
|
| Q |
232 |
ttttgtttt-attcatgtttttgaaacactcagctacaaaatatgtgttgcaggcagttgctaaacatctatatggtacattgagaaactcaagcgttgt |
330 |
Q |
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| T |
30262550 |
ttttgtttttattcatgtttttgaaacactcagctacaaaatatgtgttgcaggcagttgctaaacatctatatggtacattgagaaactcaagcgttgt |
30262451 |
T |
|
| Q |
331 |
catgtccaatttaattggtccagtggaacctatggctttggcaaaccatcctgttaaaggcttgtattttataatgtctggtgcacctgaggtaaccatc |
430 |
Q |
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| T |
30262450 |
catgtccaatttaattggtccagtggaacctatggctttggcaaaccatccagttaaaggcttgtattttataatgtctggtgcacctgaggtaaccatc |
30262351 |
T |
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| Q |
431 |
atcttttctctctg |
444 |
Q |
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| T |
30262350 |
atcttttctctctg |
30262337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 280 - 428
Target Start/End: Complemental strand, 30302484 - 30302336
Alignment:
| Q |
280 |
gcaggcagttgctaaacatctatatggtacattgagaaactcaagcgttgtcatgtccaatttaattggtccagtggaacctatggctttggcaaaccat |
379 |
Q |
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| T |
30302484 |
gcaggctgttgctaaacatatctatggtacattgagaaactcaagtgttgtaatatccaatttgattgggccagtggaacctatggctttggcaaaccat |
30302385 |
T |
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| Q |
380 |
cctgttaaaggcttgtattttataatgtctggtgcacctgaggtaacca |
428 |
Q |
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| T |
30302384 |
cctgttaaaggcttgtactttacaatgaccggtggacctgaggtaacca |
30302336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 424
Target Start/End: Complemental strand, 30270159 - 30270008
Alignment:
| Q |
273 |
atgtgttgcaggcagttgctaaacatctatatggtacattgagaaactcaagcgttgtcatgtccaatttaattggtccagtggaacctatggctttggc |
372 |
Q |
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| T |
30270159 |
atgttttgcaggcagttgctaaacatatctatgataccttgagaaattcaagtgttgtcatatccaatttgattgggccagtggaacctatggctttggc |
30270060 |
T |
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| Q |
373 |
aaaccatcctgttaaaggcttgtattttataatgtctggtgcacctgaggta |
424 |
Q |
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| T |
30270059 |
aaaccatcctgtgaaaggcttgtactttacaatgacaggtggacctgaggta |
30270008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 424
Target Start/End: Original strand, 30282030 - 30282181
Alignment:
| Q |
273 |
atgtgttgcaggcagttgctaaacatctatatggtacattgagaaactcaagcgttgtcatgtccaatttaattggtccagtggaacctatggctttggc |
372 |
Q |
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|||| ||||||||||||||||||||| | |||| ||| |||||||| ||||| |||||||| |||||||| ||||| ||||||||||||||||||||||| |
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| T |
30282030 |
atgttttgcaggcagttgctaaacatatctatgataccttgagaaattcaagtgttgtcatatccaatttgattgggccagtggaacctatggctttggc |
30282129 |
T |
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| Q |
373 |
aaaccatcctgttaaaggcttgtattttataatgtctggtgcacctgaggta |
424 |
Q |
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|||||||||||| ||||||||||| |||| |||| | |||| |||||||||| |
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| T |
30282130 |
aaaccatcctgtgaaaggcttgtactttacaatgacaggtggacctgaggta |
30282181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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