View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12113_high_2 (Length: 803)
Name: NF12113_high_2
Description: NF12113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12113_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 555; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 12 - 618
Target Start/End: Complemental strand, 52584273 - 52583650
Alignment:
| Q |
12 |
aacctgtggtggagaatctaacaagtgattattttttcagtggtggaagtggaacttttgcttcaggttctaataataataactcattattattgaaccg |
111 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584273 |
aacctgtggtggagaatctaactagtgattattttttcagtggtggaagtggaacttttgcttcaggttctaataataataactcattattattgaaccg |
52584174 |
T |
|
| Q |
112 |
ttctacttctacttcttatggaagtgagagttttggttccgttattgggaactctagataccttaaaccagtacagtcacttcttgaagatcttgttgat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584173 |
ttctacttctacttcttatggaagtgagagttttggttctgttattgggaactctagataccttaaaccagtacagtcacttcttgaagatcttgttgat |
52584074 |
T |
|
| Q |
212 |
gttggtggaaatgtgattgatagaatgaatgaaaaatatgctgagaagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaaag |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584073 |
gttggtggaaatgtgattgatagaatgaatgaaaaatatgctgagaagttgtttcatgggagtagaacaggtgctagaacactctcctctgagctcaaag |
52583974 |
T |
|
| Q |
312 |
cagagttgaggattcatggacatttattggctgacaaacatgaacatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583973 |
cagagttgaggattcatggacatttattggctgacaaacatgaacatcaagtcaaaattgcaaagctcatttcattgttggatgaggttggttggtcttc |
52583874 |
T |
|
| Q |
412 |
t-----cttcctgattttatgttcactagtactaataaagaaaattgcatcatacttgagtagtattcg------------aattaagtgctagagttta |
494 |
Q |
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| T |
52583873 |
tcttctcttcctgattttatgttcactagtactaataaagaaaattgcatcatacttgagtagtattcgaataaaaagcttaattaagtgctagagttta |
52583774 |
T |
|
| Q |
495 |
tcaaataagtgtttatgtataaattatttttaaaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttat |
594 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52583773 |
tcaaataagtgtttatgtataaattatttttaaaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatttat |
52583674 |
T |
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| Q |
595 |
agacatggtataagctatttctat |
618 |
Q |
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| T |
52583673 |
agacatggtataagctatttctat |
52583650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 625 - 787
Target Start/End: Complemental strand, 52583443 - 52583281
Alignment:
| Q |
625 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
724 |
Q |
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| T |
52583443 |
gttgtgcttaattttcaggttgagggtagatatgagaagtactaccatcaaatggaagaagtagtatcatcttttgaaatgatagcaggtttgggagctg |
52583344 |
T |
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| Q |
725 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatg |
787 |
Q |
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| T |
52583343 |
caaagtgttacactgctctggcacttcaagcaatgtctaggcatttttgtagcttaagagatg |
52583281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 527 - 591
Target Start/End: Complemental strand, 19395216 - 19395153
Alignment:
| Q |
527 |
aaacaaaaatcaaattgttttggtatgaactatataaatgttttcataagctatctttgagaatt |
591 |
Q |
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| T |
19395216 |
aaacgaaaatcaaattgtttttgtataagctata-aaatgttttcattagctatcttggagaatt |
19395153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 534
Target Start/End: Original strand, 38033892 - 38033934
Alignment:
| Q |
492 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
534 |
Q |
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| T |
38033892 |
ttatcaaataagtgtttatgtataagttatttatataacaaaa |
38033934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 492 - 534
Target Start/End: Original strand, 43133890 - 43133932
Alignment:
| Q |
492 |
ttatcaaataagtgtttatgtataaattatttttaaaacaaaa |
534 |
Q |
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|||||| |||||| |||||||||||||||||| |||||||||| |
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| T |
43133890 |
ttatcacataagtatttatgtataaattatttctaaaacaaaa |
43133932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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