View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12113_low_1 (Length: 1087)
Name: NF12113_low_1
Description: NF12113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12113_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 1001; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 1001; E-Value: 0
Query Start/End: Original strand, 19 - 1080
Target Start/End: Complemental strand, 38567863 - 38566802
Alignment:
| Q |
19 |
aaaatcaactatatttgataacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctcagtccagtagtggaacgaaacatacatg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567863 |
aaaatcaactatatttgataacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctcagtccagtagtggaacgaaacatacatg |
38567764 |
T |
|
| Q |
119 |
ttgctttttattttcttgctgcttatgtgtggcagtgctatgataaacatgtagcctaatttccttcctcatgttgtgtgtattttcaggttgcttcctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38567763 |
ttgctttttattttcttgctgcttatgtgtggcagtgctatgataaacatgtagcctaacttccttcctcgtgttgtgtgtattttcaggttgcttcctt |
38567664 |
T |
|
| Q |
219 |
tactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaaggttttatatctggagtaggtgtaggc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567663 |
tactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaaggttttatatctggagtaggtgtaggc |
38567564 |
T |
|
| Q |
319 |
acatttatgtttcttatgttcctaggttatgctttggctgtatggtttggtgcaaagatggtcatggaaaaaggatataatggaggcacagtgattaatg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38567563 |
acatttatgtttcttatgttcctaggttatgctttggctgtatggtttggtgcaaagatggtcatggaaaaaggatataatggaggcacggtgattaatg |
38567464 |
T |
|
| Q |
419 |
tgattatggtcgtgttaactgcttccatgtaagtggtaccttcatttttatgcacccccatgctaagtcaatttgaaagttccttaattacattaattct |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567463 |
tgattatggtcgtgttaactgcttccatgtaagtggtaccttcatttttatgcacctccatgctaagtcaatttgaaagttccttaattacattaattct |
38567364 |
T |
|
| Q |
519 |
tgtttcttcatatggatatgtannnnnnnaggtctcttggccaggcatcatctggtttgagtgcttttgcggcaggtcaggcggcggcttacaaaatgtt |
618 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38567363 |
cgtttcttcatatggatatgtatttttttaggtctcttggccaggcatcatctggtttgagtgcttttgcggcaggtcgggcggcggcttacaaaatgtt |
38567264 |
T |
|
| Q |
619 |
tgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttc |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567263 |
tgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggtgaaatagagttgaaagaagtttatttc |
38567164 |
T |
|
| Q |
719 |
agttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaa |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567163 |
agttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacagcattggttggacaaagtggaagtggaa |
38567064 |
T |
|
| Q |
819 |
agtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaagaatttcaggtcaggtggat |
918 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38567063 |
agtcgacaattatcagtttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaacatgaaagaatttcaggtcaggtggat |
38566964 |
T |
|
| Q |
919 |
cagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacggtaaagatggagcaacgattgaagaa |
1018 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38566963 |
cagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatatggtaaagatggagcaacgattgaagag |
38566864 |
T |
|
| Q |
1019 |
ataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggttct |
1080 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38566863 |
ataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccccaggttct |
38566802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 192 - 1080
Target Start/End: Complemental strand, 38526562 - 38525677
Alignment:
| Q |
192 |
ttgtgtgtattttcaggttgcttcctttactggtgaaaagcaagcagtagctaattacagcaaacatcttgtagatggttacaaatcaggagtttttgaa |
291 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
38526562 |
ttgtgtatattttcaggttgcatcctttactggggaaaagcaagcagtatctagttatagcaaatttcttgtagatgcttacaaatcaggagtttttgaa |
38526463 |
T |
|
| Q |
292 |
ggttttatatctggagtaggtgtaggcacatttatgtttcttatgttcctaggttatgctttggctgtatggtttggtgcaaagatggtcatggaaaaag |
391 |
Q |
| |
|
||| |||| |||||| ||| |||||||| |||||||| |||| ||| |||||||||||||| ||||||||||||||||||||| |||| ||||||| |
|
|
| T |
38526462 |
ggtactatagctggagcaggactaggcacagttatgtttgttattttctgtggttatgctttggcagtatggtttggtgcaaagatgatcattgaaaaag |
38526363 |
T |
|
| Q |
392 |
gatataatggaggcacagtgattaatgtgattatggtcgtgttaactgcttccatgtaagtggtaccttcatttttatgcacccccatgctaagtcaatt |
491 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||| | ||||||||| |||||||||||||| ||| ||||||||||| | || ||| || | || |
|
|
| T |
38526362 |
gatataatggtggcaccgtgattaatgtgattatcgccgtgttaacagcttccatgtaagta--accatcatttttatgaatatccttgccaataaagtt |
38526265 |
T |
|
| Q |
492 |
tgaaagttccttaattacattaattcttgtttcttcatatggatatgtannnnnnnaggtctcttggccaggcatcatctggtttgagtgcttttgcggc |
591 |
Q |
| |
|
||||||||||||| ||| ||||| | | | | | ||||||||||| ||||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
38526264 |
tgaaagttccttatttagattaaaaaatatatat-cttatggatatgtgtatttttaggtctcttggccaggcatcaccaagtatgagtgcttttgcggc |
38526166 |
T |
|
| Q |
592 |
aggtcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggt |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38526165 |
gggtcaggcggcggcttacaaaatgtttgagacaattaaaaggaggccagagatagatgcttatgatccaaatggaaaaatattagaggatattcaaggt |
38526066 |
T |
|
| Q |
692 |
gaaatagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatatttaatggattctctcttcatataccgagcggaacaaccacag |
791 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | | |
|
|
| T |
38526065 |
gagatagagttgaaagaagtttatttcagttatccggcaagacctgaggagctgatattcaatggattctctcttcatatatcaagcggaacaaccgcgg |
38525966 |
T |
|
| Q |
792 |
cattggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaa |
891 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| | ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
38525965 |
cattggttggacaaagtggaagtggaaagtccacagttattagtttggtagaaagattctatgatccacaggccggtgaagtacttatcgatggaattaa |
38525866 |
T |
|
| Q |
892 |
catgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatac |
991 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
38525865 |
catgaaagaacttcagcttaggtggatcagagggaaaattggtcttgtcagccaggagccagtgttatttgcatccagcattaaggataacattgcatat |
38525766 |
T |
|
| Q |
992 |
ggtaaagatggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggttct |
1080 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
38525765 |
ggtaaagatggagcaacaattgaagaaataagatctgcatccgaacttgcaaacgccgccaaattcattgataaacttccacaggttct |
38525677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 794 - 1077
Target Start/End: Original strand, 51199472 - 51199755
Alignment:
| Q |
794 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttcttatcgatggaattaaca |
893 |
Q |
| |
|
||||| || |||||||| |||||||| || ||| || ||| |||| |||||||||| |||||||||||||| ||||||||||| || || || | ||| |
|
|
| T |
51199472 |
ttggtagggcaaagtgggagtggaaaatccacagttgtcagtttgatagagagattttatgatccacaggctggtgaagttctcattgacggtgtcaacc |
51199571 |
T |
|
| Q |
894 |
tgaaagaatttcaggtcaggtggatcagagggaaaattggtcttgttagccaggagccagtgttgtttgcatccagcattaaggataacatttcatacgg |
993 |
Q |
| |
|
| ||||||||||| | | ||||||||| |||||| || || || |||||||| || || | ||| | | ||||||||| || |||||| |||| || |
|
|
| T |
51199572 |
tcaaagaatttcaactgaaatggatcagacagaaaataggcctagtcagccaggaacctgttctctttacttgcagcattaaagagaacattgcatatgg |
51199671 |
T |
|
| Q |
994 |
taaagatggagcaacgattgaagaaataagatctgcatctgaacttgcaaacgctgccaaattcattgataaactgccacaggt |
1077 |
Q |
| |
|
|| ||||| || || ||||||||| ||| ||||| | || ||||| || ||||||||||| || |||||||| || ||||| |
|
|
| T |
51199672 |
caaggatggtgctactgatgaagaaatcagagctgcagccgagcttgctaatgctgccaaatttatagataaacttcctcaggt |
51199755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 719 - 859
Target Start/End: Original strand, 51145408 - 51145548
Alignment:
| Q |
719 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
817 |
Q |
| |
|
|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
|
|
| T |
51145408 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51145506 |
T |
|
| Q |
818 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
859 |
Q |
| |
|
|| || ||| || | | |||| |||||||||||||||||||| |
|
|
| T |
51145507 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51145548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 719 - 859
Target Start/End: Original strand, 51156549 - 51156689
Alignment:
| Q |
719 |
agttatccggcaagacctgaggagctgatatttaatggattctctctt-catataccgagcggaacaaccacagcattggttggacaaagtggaagtgga |
817 |
Q |
| |
|
|||||||| ||||||| || || |||||||| |||||||| |||||| ||| |||| ||||| || || |||| ||||| || |||||||||||||| |
|
|
| T |
51156549 |
agttatcctacaagaccagatgaactgatattcaatggattttctctttcat-taccaagcggcactactgcagctttggtagggcaaagtggaagtggg |
51156647 |
T |
|
| Q |
818 |
aagtcgacaattatcaatttggtagagagattctatgatcca |
859 |
Q |
| |
|
|| || ||| || | | |||| |||||||||||||||||||| |
|
|
| T |
51156648 |
aaatccacagttgttagtttgatagagagattctatgatcca |
51156689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 794 - 876
Target Start/End: Complemental strand, 49737396 - 49737314
Alignment:
| Q |
794 |
ttggttggacaaagtggaagtggaaagtcgacaattatcaatttggtagagagattctatgatccacaggcaggtgaagttct |
876 |
Q |
| |
|
||||| ||||||||||| ||||| || ||||| |||| | |||| |||||||||| ||||||||||||| |||||| |||| |
|
|
| T |
49737396 |
ttggtaggacaaagtgggagtgggaaatcgacggttattagtttgatagagagattttatgatccacagggtggtgaaattct |
49737314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 7263061 - 7262988
Alignment:
| Q |
18 |
aaaaatcaactatatttgataacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctca |
91 |
Q |
| |
|
||||||||| |||| | || ||||||| || || ||||| ||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
7263061 |
aaaaatcaattatactcgagaacatcctaaaatgtcaaaatcaattctacacttctagaatcaattttgcctca |
7262988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 10859936 - 10860016
Alignment:
| Q |
38 |
aacatccaaacatatcaaattcatttctacacttctaaaattaattttgcctcagtccagtagtggaacgaaacatacatgt |
119 |
Q |
| |
|
||||| |||||| ||||| |||||||||||| |||| ||| ||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
10859936 |
aacattcaaacaggtcaaaatcatttctacacctctataatgaattttgcctc-ttccaaaagtggaaccaaacatacatgt |
10860016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University