View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12113_low_16 (Length: 226)
Name: NF12113_low_16
Description: NF12113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12113_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 36184256 - 36184037
Alignment:
| Q |
1 |
ttaacatgtcacttttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaattaacttggagtgtaaggctat |
100 |
Q |
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| T |
36184256 |
ttaacatgtcacttttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaattaactttgagtgtaaggctat |
36184157 |
T |
|
| Q |
101 |
gtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtctatttttctacacag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36184156 |
gtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtctatttttctacacag |
36184057 |
T |
|
| Q |
201 |
atccttggaacacaggttct |
220 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
36184056 |
atccttggaatacaggttct |
36184037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 36196517 - 36196313
Alignment:
| Q |
1 |
ttaacatgtcacttttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaattaacttggagtgtaaggctat |
100 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||| |||||||||||||||| || | |||||| |||| || |||||||||||||| |||||||| |
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| T |
36196517 |
ttaacaagtcacttttgctaaatagtatagcatattgtagctgttttattttcaaattttaatttagattttttaatattaacttggagtgcaaggctat |
36196418 |
T |
|
| Q |
101 |
gtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtctatttttctacacag |
200 |
Q |
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| ||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
36196417 |
gcttt-gacctgataaataattgtataa-ttgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtcgatttttctacacag |
36196320 |
T |
|
| Q |
201 |
atccttg |
207 |
Q |
| |
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||||||| |
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| T |
36196319 |
atccttg |
36196313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 36209627 - 36209442
Alignment:
| Q |
14 |
tttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaattaacttggagtgtaaggctatgtttttgaccgga |
113 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||||||| |||||||||||||| ||||||||| ||||||| || |
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| T |
36209627 |
tttgctaaatagtataacatattgtagctgttttattttcaaagtttaatttagatttttgaatattaacttggagtgcaaggctatg-ctttgacctga |
36209529 |
T |
|
| Q |
114 |
taaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttgtctatttttctacacagatccttggaa |
210 |
Q |
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| T |
36209528 |
taaataattgtataa----------ttattgtacaatgtttgaaatctcaaaattttaggagatgttttgtcgatttttctacacagatccttggaa |
36209442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 36188183 - 36188033
Alignment:
| Q |
14 |
tttgctaaatagtataacatattgtaactgttttattttcaaagttaagtttagaattttgaaaattaacttggagtgtaaggctatgtttttgaccgga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| |||||||||||||| ||||||||| ||||||| || |
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| T |
36188183 |
tttgctaaatagtataacatattgtaactgtttaattttcaaagtttaatttagaattttgaatattaacttggagtgcaaggctatg-gtttgacctga |
36188085 |
T |
|
| Q |
114 |
taaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaata |
166 |
Q |
| |
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||||||||||||| |||| | ||| |||||||||||||||||||||||||||| |
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|
| T |
36188084 |
taaataattgtat-aattctgaagtcttttgtactatgtttgaaatctcaata |
36188033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 36203218 - 36203113
Alignment:
| Q |
84 |
ttggagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatattttaggagatgttttg |
183 |
Q |
| |
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||||| ||||||||||||||||| || | ||||||||||| ||| ||||| | ||||||||||||| |||| | ||||||||| || ||||||||| |
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| T |
36203218 |
ttggattgtaaggctatgtttttaactg-ataaataattgcgtaa-ttgtacaagcttttgtactatttttggcgtgtcaatatttatggggatgttttg |
36203121 |
T |
|
| Q |
184 |
tctatttt |
191 |
Q |
| |
|
|||||||| |
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| T |
36203120 |
tctatttt |
36203113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 36212063 - 36212000
Alignment:
| Q |
42 |
tgttttattttcaaagttaagtttagaattttgaaaattaacttggagtgtaaggctatgtttt |
105 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| | ||| | | ||||||||||||||||||| |
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| T |
36212063 |
tgttttattttcaaagtttaatttagaattttggatattgatctagagtgtaaggctatgtttt |
36212000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 36200413 - 36200331
Alignment:
| Q |
14 |
tttgctaaatagtataacatattgtaactgttttattttcaaag-ttaagtttagaattttgaaaattaacttggagtgtaag |
95 |
Q |
| |
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|||||||||| | ||| |||||||| ||||||| ||||||||| || | |||||||||||| | ||||| |||||||||||| |
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| T |
36200413 |
tttgctaaatgatgtaatatattgtagctgttttgttttcaaagtttcattttagaattttggatattaatttggagtgtaag |
36200331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 155
Target Start/End: Complemental strand, 36201857 - 36201749
Alignment:
| Q |
45 |
tttattttcaaagttaagtttagaattttgaaaattaacttggagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttg |
144 |
Q |
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||||||||||||||| |||||||||||| | | | | || ||||| ||||||||||||| ||| ||||||||||| | ||| ||||| ||||||||| |
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| T |
36201857 |
tttattttcaaagtttcatttagaattttggataatgattttgagtgcaaggctatgtttta-accagataaataattttgtaa-ttgtataggcttttg |
36201760 |
T |
|
| Q |
145 |
tactatgtttg |
155 |
Q |
| |
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||| ||||||| |
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| T |
36201759 |
tacgatgtttg |
36201749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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