View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12113_low_5 (Length: 656)
Name: NF12113_low_5
Description: NF12113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12113_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 634; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Complemental strand, 39680081 - 39679436
Alignment:
| Q |
1 |
tagaccaagtagcactatctcttgctgtcatcttatcttgcaaagtttttgactgagtaaccaacttccttaatttctccaaatcaggtgacatatgttt |
100 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39680081 |
tagaccaagtagcactatctcttgcggtcatcttatcttgcaaagtttttgactgagtaaccaacttccttaatttctccaaatcaggtgacatatgttt |
39679982 |
T |
|
| Q |
101 |
tataacaccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggccttgttcttgggccaacaaaccttgttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679981 |
tataacaccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggccttgttcttgggccaacaaaccttgttca |
39679882 |
T |
|
| Q |
201 |
ccccaccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtggcacacaatgttgcattaaagcag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679881 |
ccccaccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtggcacacaatgttgcattaaagcag |
39679782 |
T |
|
| Q |
301 |
aaagaagcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccattatagtattaaaatgttcgtcttctcgaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679781 |
aaagaagcgaaccaagagttgaatcttgtaaatcttggaggagatgtatgtaagaatttgggtcagccattatagtattaaaatgttcgtcttctcgaag |
39679682 |
T |
|
| Q |
401 |
gagtggtaagtattttgcaaccgcgagtggcgcactttgatcaaaacggatttgatctttccaccattcgcgtaaactatcagacgaacctgataccggt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679681 |
gagtggtaagtattttgcaaccgcgagtggcgcgctttgatcaaaacggatttgatctttccaccattcgcgtaaactatcagacgaacctgataccggt |
39679582 |
T |
|
| Q |
501 |
ttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtatttgagtactgaatcttgtgctcttgaca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39679581 |
ttacccttttcagggatgattccatagacaaaacctttggctttgcatacatccatgatctttgccatgtatttgagtactgaatcttgtgctcttgaca |
39679482 |
T |
|
| Q |
601 |
tctttttccttcttgatgcttcttgttttgcttgttgcacaggttc |
646 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39679481 |
tctttttccttcttgatgcttcttgttttgcttgttgctcaggttc |
39679436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 456 - 637
Target Start/End: Complemental strand, 38052169 - 38051988
Alignment:
| Q |
456 |
tctttccaccattcgcgtaaactatcagacgaacctgataccggtttacccttttcagggatgattccatagacaaaacctttggctttgcatacatcca |
555 |
Q |
| |
|
|||||||||||||| || || || || || ||||||| ||| ||||| || || || || | || |||||||||||||||| |||||||||| || |
|
|
| T |
38052169 |
tctttccaccattcacgcaagctttctgaagaacctgttactggttttcctttctctggaacaataccatagacaaaaccttgagctttgcatattgtca |
38052070 |
T |
|
| Q |
556 |
tgatctttgccatgtatttgagtactgaatcttgtgctcttgacatctttttccttcttgatgcttcttgttttgcttgttg |
637 |
Q |
| |
|
| ||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||| || | |||||||||||| |
|
|
| T |
38052069 |
taatcttcatcatgtatttgagaattgaatcttgtgctcttgacatctttttccttcttgatgcctcatcttttgcttgttg |
38051988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 3 - 313
Target Start/End: Complemental strand, 38052625 - 38052315
Alignment:
| Q |
3 |
gaccaagtagcactatctcttgctgtcatcttatcttgcaaagtttttgactgagtaaccaacttccttaatttctccaaatcaggtgacatatgtttta |
102 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||| ||||||||| ||||| ||||| || ||| | || | ||| || | |||||| |||| ||||| | |
|
|
| T |
38052625 |
gaccaagttgcactatctttagctgtcatcttatgttgcaaagtctttgattgagtcactaaccttctcactttatcaacatcaggagacaagtgtttga |
38052526 |
T |
|
| Q |
103 |
taacaccagccaaaacagaaactttccatgcctttttaaggtcatgtggtttcttataaggtggtgggccttgttcttgggccaacaaaccttgttcacc |
202 |
Q |
| |
|
| | ||||||| |||||||||||||| |||||||| | ||||| ||||| ||||||||||||||||| |||| || | ||| |||||||| ||| |
|
|
| T |
38052525 |
tgattgcagccaacacagaaactttccaagcctttttcaaatcatgaggttttttataaggtggtgggccatgttgttctgacaaaccaccttgttgacc |
38052426 |
T |
|
| Q |
203 |
ccaccaattttctgatcctgtgggccaccagggaggagaaattcccctctcgagtggaaacctcctctgtggtggcacacaatgttgcattaaagcagaa |
302 |
Q |
| |
|
|||||| | ||||| ||| | |||||||| ||||||| | || | || || || || || || |||||||| ||||| |||||||||| ||| ||| |
|
|
| T |
38052425 |
ccaccactgttctgttccattaggccaccatggaggagccaaacctatttcaagagggaatcttctttgtggtggtacacagtgttgcattagagctgaa |
38052326 |
T |
|
| Q |
303 |
agaagcgaacc |
313 |
Q |
| |
|
||||| ||||| |
|
|
| T |
38052325 |
agaagagaacc |
38052315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University